GgaINT1022720 @ galGal4
Intron Retention
Gene
ENSGALG00000003776 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr17:6215659-6217198:+
Coord C1 exon
chr17:6215659-6215740
Coord A exon
chr17:6215741-6216124
Coord C2 exon
chr17:6216125-6217198
Length
384 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
3' ss Seq
CCTTTTCTGTGTGTCAAAAGGCA
3' ss Score
7.72
Exon sequences
Seq C1 exon
GCCTAGCTCTGCCAGCCCAAATGGGAAGCCATCTGGACCAGCAGTTAGTATGGGCTCTGTGCAAGGACACTATGTGCAACAG
Seq A exon
GTAGTGTATGTCAGTAGTCTAACCCAGTAGCGTCTGTTCTTCTGCATTATCACCCTTGTTCTTGTACTTGAGAGGGTGACAGTGTAGTTAAGCTATATGTGGAAGTTATTTTCCTCGCAAGGAAAGCAAGAGAGTGGACTGGGTGGATGCTGTACTGAGCCCATGAGTAATGCTTGGTGATGGGGGGTCAGGAAAAGTTAGAGGATTGCATGTCACATGGTGCTTATGTTGAATTTTTGTGGGTGTATTTGAGATCCTTTGCATAAGGTGTTTTAGGGTAGCAAAGGGTGGCAGAACAGCTGAATTTTGGAGCAAATTTTATGTCTTGCATGAATGATGGTCACCAGTGTTTTTTCTAATGCTTCCTTTTCTGTGTGTCAAAAG
Seq C2 exon
GCAAAACAACGGGTGGATGAAAATAAAGCCAATCTGGGAGCAGTAAAGCTGCAAGAAACAGCCTCCACAAGCCAGATGAAACCAGTGCGCACAGGAGCGATCAAACCTCAGGCAGTAAAAGTGGAGGAAAGCAAGGCCTAGGAGCACAGCTGATGCCAGCTGGTCCTGCTGGCTGATAGGTCCTACAGCTCAGACTGAACCCCACTGGATCTCCTGAAAATCTCACCAGACCTACGCCTGCCCCACACTGACTGGCTACAGTGACATCATCCAAGTCCCTCTCCTAGCAAAGCAGTTTGAAACGGTGGATATGACATTGACCTGCTTGCTTTGAAACAAACCAACCATGTGACTTTTAAGTGGCTTAAGCCTTTTTTTTCTCCACCCCATGCCCCATCCACAGGTAGCTGTGATAGCTCACTTGGCAAAGCCCATCCTTCTCCTTCCCTACTTCTGTCTCAGCAGAGTGGCAACTGAAGGAGAGGGGGTTACTTTAGAGGTTTTTCATTTTAAAGGCAGCTGAGGTTTTTACAGAGAAAAAAAGCTATATCCTTGTTTATAGCAGAACTTTTATATGTTCTCTCACTTTTTTCCCTTTCTTTCTGCTTTCCTCATTCCTTCCAGAAGAGAAGTCCCATTAACTAAAATTATGTTCTGACAGAGCTCCTCCTGATTTTTATACGTAGTTCTGTGCAATGCTGAGAATCTGTACTCTTCTAAATTGAGTTGGATTGGGTATATTTTCCCCAGATAATTTAGCCTTTCAGATTGTGTAAAAGCAAAACAAACAACCACAGTACACTTATAGCGTTCATGAATTTTTCAGTATTTTTGTTTTAAGCTAGAAGCAGTGCTTGCATTAGAATAAATGTGTACTAAAGTATATAGTAGATCAGTGCATTAATCTTGAAAGTTGCACCATGTTAATTGTAGCTTTGGGGTGCCTCGTGCACAACAAAATGTGGCATTTTCGTTTTAAGGAAAAACGCACCAAACTTCTGTTGCAAGCTCCTCTGGATCTAGGGATTTTTGTTTGTTTTTTGTAGGTTTGAGATTTCTTTAGTGACTGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776:ENSGALT00000005992:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATCTGGACCAGCAGTTA
R:
ACTGCTTTGCTAGGAGAGGGA
Band lengths:
352-736
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]