BtaINT0118617 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101640283-101643102:+
Coord C1 exon
chr11:101640283-101640374
Coord A exon
chr11:101640375-101643020
Coord C2 exon
chr11:101643021-101643102
Length
2646 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
CCCTCCTTTGGTTTTTTCAGGCC
3' ss Score
10.48
Exon sequences
Seq C1 exon
TCCTCTCAGATGGAGATGAAGGGCTTCCACTTTGCCGACAGTAAACAGAATGTTCCTTCAGGAGGCTCCGTGCCGTCACCACAGGCCTACAG
Seq A exon
GTAAAGCCCATCCTGGGGTTGGGCGCTCACAGTGAGCCCGCAAGGTGCAGCCATGGGCCCCGGGAGAGCAGGGCGCTGAGGTGGGGTCGCCTTTGTCAGCCCACCTGTCACCAGGAAGCTGCAGTGCGGGGATGCAGGAGACTCGGGGCTGGTTCTGCTTTTAATCATTATCATAAACTGTTCTGATGCCAGAGAACTTTGTGGAGAAATAGGGAAAGGAAAGGTTGATGTTACGATAACATCAGGCCCGACCCTGGCTACTGGCAGCCTTCTCACCAGATTCTTCGTAAAAGACTCACTGGCATGGGGGGTGCACACTCTGGAGCGGGGATTCCTCTCCTGGGGCCACGTGTCCCCATGGGTTTCTGACCCACCAGGGCTTGCTGCTCTGGGCTCACAGGCATGAGTGGACCTCCTCTGGATCTGCCTCCACCTCTAGTAAGTGTTCCAGGTCGCTTGCTGGATTCAGAGGGGGCTTGGTGTGTGTGAGCCATGGGCTGAGTTATGGCTGACCCTTGAACGATACAGGGGGTAGGGGTGCTAACCCTCCACGCGGTTGAGAATCAAGTATACCTTCACAGCCGTTCATGCCCACGGTTCCCTATTTGAGGATTCAGCCCACTGTGGGTTGTGTAGTACGTGTATATTGAAAAAAATGTGTGTGTAAGTGGACCCCGTGCAGTTGTTCAAGGGTCAGCAGTTCTTAGTATGTTAGCGTCCAGTTCTGACAGCTTTTGCACCGGCTGGGAAGGCCCCACACTCTGGGGTCTGGCCCAAGGGTTGGCACAGTCAACTCTTGTTAACCGTGGAAGGTTCCTGGAATTCCCTCCTGTTTGCCCGTGAGGAACACAGGTGTGCGTGACCTGCAGGGCCTGTGCGAGGTGACCGCGTAGCTGTGGCTGAGCTCACCCCCCACACAGCCAGCCGCCTGCCCCCTCGACCCGGGGCGTGGAGGCCGGTCGCCCTCCTTCACGTCAGTCCTTTTCCAGATGCAGTTCCTGAGAAAGGGGTTTTTGTCAATTGCCCCCTGATTCATTATCTTTCCTGTTCTTATTTTCACTCTCTTGGCTTGACTTTTTTCCTGTTTGTTGTTTTCAAGCATATTTTTCATACAGGCCAAAACAGGCATATTTTTCATACAGACCTGTAAAAAGTATGTATGGGCAGCAGCAGCAAACAATGAGTTTGGGTAGAAAAAAGGAAGCTTCAGGCACAAACAGATTCCCCTGCTGCCACAGGCAGGTTTTATCCCCGTCTGATTGGAGAGCCTTCCTTGGAGGCAAACCCGGAAAAGCCACGCTCACGTAACCAGAGTCGCTTGTGTCCATTCACTGTTGGCACGGCTGCAGCAGCTTTGTTTTTGGGAGAACACTTAGAAAAGACAAAGTGTAGCTGGTAGCCTTTGTTGTTGTCTTAGTGGGGTTGGGAGAATGGGAGTGGTTTACAGTGCAGTGTTGCCCACGTTTTCTGGAGACAGGGCTTCAGATGCATGCCCTGTCAAAGAAGGGTTCCTTGACCAGATATTTCCGGCGGGGGTGAGCCCAGGAGGGCTTGCTGGGGAGTCAGGGTGCACCTCAGCAGAGAGCCTGCATTCCTCTGGCCCTCAGGGGGTCTTGTTGAGCTCTTCTTATGACCTTTGACCACAGAATCCTTTTACACAAGTTTTTTAGTCACTAAGTGGTGTCCGACTCTGTGGCCCCATGGCCTATAGCCCACCAGGTTCCTCTGTCCATGGGATTTCCTAGGCAAGAATACTGGAGTGGGTTGCTATTTCCTTCTCCAAGGGATGACCCCTCCGTAGGGATCGAGGCCGCACCTCCTGCGTTGGCAGGCGGATGCTTCGCCGCTGAGCCACCAGGGAGGCCCTTTCCCACACAGACCTGACTACTTAACAGCCTTGGAGCTAGTGACTGCCAGTGGGGCACATGTAGAAGGGGCTTACAGTTCCATTACTTTTGGTATCATTCTCTGCTACCTACTGCCCTTCACTTCCCAAATGAAGACTGGAAGGACGCTTGGCACAGCGCATGTGTCAGGCTTTTGGGGGGCGGGGGGCACGCTGTGTAGCTCGCAGGATCTTAGTTCCCCAGCCAGGGGTCGAACCTGGGCCCCAACAGTGTGAGCACCTAGTCCTAACCTCTGGATCACCAAGGAGTTCCCTTCTTTTTAAAGTCTAAACTCCTATTGGAGTTTAAGCTCATTTTTATTTTTTATTTATTTCATCAATTATACATACACATATGTATCTGCCATGGCACTCGGCTTGTGGGATCTTAATTCCCTGACCAAGGATTGAACCCAGATCCATGGCAGTGAAAAGCCGAGTCCTGACCACTGGACACCAGGGAATCCCTTCAGGTGTCAGGTCTTACAGCCCTTTTGTCTGGAGCATCAAGTTGGTCCAGAGCCTCCAAACCTGAGAGACGGTTGGTGACTGTCTGTCCTTTGGTCGGTGTCTGCCCATGGTGGGGACCTGGCCACCGCCCCTCAGGTGCATCCTGTGAACTGGGTTGGAGGTGCCAGGGCCCCGTGGCGACACCCTCGCCCCCCGTGCTCTGGCTGTCTGGGTCTGTATCCTCCGATGGAGGCTTGACTCCGTTTCCGTGGTGACGCGTGTGTTCTCACCCCCTCCTTTGGTTTTTTCAG
Seq C2 exon
GCCTAGCTCTGCTAGCCCCAGTGGGAAGCCCTCTGGATCAGCAGTTAACATGGGCTCTGTGCAGGGACACTACGTTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400:ENSBTAT00000010939:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development