HsaINT0016689 @ hg38
Intron Retention
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131492169-131494486:+
Coord C1 exon
chr9:131492169-131492260
Coord A exon
chr9:131492261-131494404
Coord C2 exon
chr9:131494405-131494486
Length
2144 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
CCTGCCTTTGGTTTTTTCAGGCC
3' ss Score
10.39
Exon sequences
Seq C1 exon
CCCTCTCAGATGGAGATGAAAGGCTTCCACTTTGCCGACAGTAAACAGAATGTCCCTTCAGGAGGCCCCGTGCCATCGCCACAGACCTACAG
Seq A exon
GTAAAGCCACTCCCTGGGGACTGCGTGCTGTGTAGCTGAGCAGTTGCCAGAGCTGCGGCCCAGTGACTCAGAAGAATCTGGGCCCAGGGAGAGCCGCCAGAGACCTGGTCCCTCTATGGGCCATGTGTCACTGTGGTGTTTCAGCACTGGGATGCACTTGTGTTCCAGTTAAATTTGGGGGAGTGAGGAGTCAGGAGAGTGGTTTTGGTTTTAATCATTATAATAAGATGCTCTGGATTGGGGAGCTTTCTGGAAAGGTAGGAAAAGGAACGGCTGACATTTAGTAGGCATCAGGACTGACGTGACTTCCCATTAGATCCTAAAAACAGGACCCACTGGCCACAGGGCTGCATCCTGGCAAGGGGAGGAGCGTGGCCTTTCCCAGCGTCTCTTTCCTCAGACTTGCCCTATGACCCCTGCCAGGGGACTTTTTATTGCTGGGCTTATGGGGCCATTCCTTCCATGCTACAAACCAGCACCCTCTTTTTGCTTCCTTTGTGTCTGTCTCCACCTCCAGCAACTGTCTCAGGTCCCCTTAGCTGGATACTCAGGTGGCTCTGTCGGATGTTGGCGAGAGCCTCTGGTCCACTGCCTTTTCTGCCCGTGCTGGTGTGTGAAGGCAGCACGCTCTGGCCCTGGGCTCCGAGGGCTTGTACAGTCCACCCTTGTTACATGTGGGAGATTCCTGAGACCCCTCTGTGTTTACAAATGAGTGAAACAGACCTGCCTGACCCATGGTGCCCTGTGAGGTTAACACCATCGCTGCAGACGCCATGAGGTATCCCCACGACTACACAGGTACTTGTGGGCCTGAGGAGCGCTCTGCAAGCCGGGCCCCCATGGTCTGCAAGTTGCTCCAGCTGCACCCCCTCTGCCTTGCTGCCCTCCCTCTGCCCCACCGCCCTTTGCCTGTCCTCCATCACAGCATTCCACTCTTGTACCTTCATTTCCAGAGAAAGGGGTTTTTGTAGATTTTCCTCCCATTCCATCTTTTCTGTTCTTATTTTCACTCTCCTGGCTTCATTTATTTCTGTTTTTAGTACGTTTCGTTTTCCTACCATGTCTGTCACATAGACCAAAACATCAGGACTGTGTGAAAAAGATAGCTGGACAGCACCGACCATGGAGCGGAACTGGAAGGAGGAAGGCGGCTGCAGGTCTCAGCAGACGCTGTCCCGCTGCTGCCACAGGCAGATTCCAGCAGCCTCTGGCTACAGAGCCTTCCTCAAAAAGCAAAACCCAGAGACAGAGCCTCACGGGACAAGAGTCGCCTGTGTCTATGTAGTTGTAGGAATGAATGGCAGCAGATTATTCTTTGGAGCATATTTAGAAAGTGGAAGCCTTAAACTAGTAGCTTTGTTTCTATGGTGTTTTAGGGGGGTTGGGGAAATTGCTATAATTGTATAAAGCAGTGTTTGCCAAAGTGTTCTGGAAATAGAGCTGCTGAGATGTGCGCTGCAAAAACAAGGGTTCCCTGGTCAGGTCCTTGGGGGAGTGCTGTCCCCAGGGTGGCCTGCTGGGGAGGGTACTCACCACACAGGCTGAGCGGGCCTAGGTTGAGAGTCCTGTTGAACTCTGCACACGGCACTTAGGCTTTTTGACCGCAGACTTTTTTTTTTTCCACGTAGCACCTAATTAACATCCCTGGGAACTAACTAGTGGTCAGTGGAACACATTTAGAAGCATGTTGTACATTTTGGTTCCCCCATCCCCTTTTCTGAAAAGTGAAGACTAGAACAATACTCGGCACAGTTCTGGCTCAGCGTCAGGCTTCTAGGCCTTTTGTCTGGGGCACTGCATCGTGTTGGTCCAGACCCTGAGACGGCCAGTGTCGCTTTCTGCACAGCAGGACAGCCATGCCCATCTGTACAGGGCCTCAGCCTCCCTCTCTTGCGGTGCGTCTCCTTGAGCTCTGTCCTGGAGGTGCCAGGGTGGTCAGTGACAGCCACCCCCTCACCCTTCTGCGTTCTGGGCTGTCTTAGGTCTGTGGTTGTTTTCCATCCAAGAGATCCACGGACCGTCCCGAGTGAGCGCCTCTGGCCGCAGGCCCTTCCTTCCTTGTGCCTCCTCCATGTGCTAGGCTTTGACTCCATTTCTGTGGTGACACGTTGTGTATTCTCAACCCCTGCCTTTGGTTTTTTCAG
Seq C2 exon
GCCTAGCTCTGCTAGCCCCAGTGGGAAGCCCTCTGGATCAGCAGTTAACATGGGCTCTGTGCAGGGACACTACGTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723:ENST00000405995:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains