MmuEX0036768 @ mm9
Exon Skipping
Gene
ENSMUSG00000039515 | Ppp2r4
Description
protein phosphatase 2A, regulatory subunit B (PR 53) [Source:MGI Symbol;Acc:MGI:1346006]
Coordinates
chr2:30295184-30298917:+
Coord C1 exon
chr2:30295184-30295284
Coord A exon
chr2:30297430-30297498
Coord C2 exon
chr2:30298810-30298917
Length
69 bp
Sequences
Splice sites
3' ss Seq
CACCCTGCCCATCCCCCCAGTTA
3' ss Score
8.87
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
ACCACCCCCACCTGGAGCCCAGACATTTCGTGGATGAGAAGGCGGTGAGCGAGAACCACAAGGACTACATGTTTCTCCAGTGCATCCTGTTCATCACTGAG
Seq A exon
TTACTGACAGAGGAACCATTTACAAAAGGCCGATTCTCTGGGGAGTGGAGAGGCAGGAACGCAGCGTCT
Seq C2 exon
ATGAAGACTGGCCCCTTTGCGGAACACTCCAACCAGCTGTGGAACATCAGTGCTGTCCCCTCCTGGTCTAAAGTGAACCAGGGCCTCATTCGAATGTATAAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039515-'14-15,'14-12,15-15
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0309510=PTPA=FE(27.0=100),PF117053=RNA_pol_3_Rpc31=FE(34.0=100)
A:
PF0309510=PTPA=PD(3.6=39.1),PF0309510=PTPA=PU(4.6=13.0)
C2:
PF0309510=PTPA=FE(28.6=100),PF117053=RNA_pol_3_Rpc31=FE(36.0=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCGTGGATGAGAAGGCGG
R:
CATTCGAATGAGGCCCTGGTT
Band lengths:
173-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types