MmuEX0046402 @ mm9
Exon Skipping
Gene
ENSMUSG00000039678 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:MGI Symbol;Acc:MGI:2385326]
Coordinates
chr2:29992193-29992702:+
Coord C1 exon
chr2:29992193-29992233
Coord A exon
chr2:29992388-29992503
Coord C2 exon
chr2:29992641-29992702
Length
116 bp
Sequences
Splice sites
3' ss Seq
TCTCTTGGCTTCCCCTCCAGGAC
3' ss Score
10.89
5' ss Seq
CCCGTCAGT
5' ss Score
2.84
Exon sequences
Seq C1 exon
GCATCCCCTGTGAGGGCGGACTGCGGTGCCTCTGCTGGAAG
Seq A exon
GACTCCTTTGGGGATGGACTACTTCATTATGCCAGTAAAGATTTCCACTCATTGGTACCAGGGAAGCCACCCTCAGAGCTGAGGTGGTGGCAGCCTCCGTTCCGGGTTACCAGCCC
Seq C2 exon
ATCCTCCTGAACTACCTCCCTCTGGAGAGAGCCTCGTGGACTTCCATCCTGGCCAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039678_MULTIEX1-3/5=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGAGGGCGGACTGC
R:
GCTTGGCCAGGATGGAAGTC
Band lengths:
93-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: