MmuEX0046402 @ mm10
Exon Skipping
Gene
ENSMUSG00000039678 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:MGI Symbol;Acc:MGI:2385326]
Coordinates
chr2:30136673-30137112:+
Coord C1 exon
chr2:30136673-30136713
Coord A exon
chr2:30136868-30136901
Coord C2 exon
chr2:30137012-30137112
Length
34 bp
Sequences
Splice sites
3' ss Seq
TCTCTTGGCTTCCCCTCCAGGAC
3' ss Score
10.89
5' ss Seq
CCAGTAAAG
5' ss Score
-1.17
Exon sequences
Seq C1 exon
GCATCCCCTGTGAGGGCGGACTGCGGTGCCTCTGCTGGAAG
Seq A exon
GACTCCTTTGGGGATGGACTACTTCATTATGCCA
Seq C2 exon
AACAGTCTGAGGAAAGCAGAGGACGGGGCTGAGCTGGGCTAGGAGGAGGGAGGCCACTGTCCAGGATGGGGACAGGCATGTCGCCAGAGCTGTGCTGTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039678-'7-10,'7-9,8-10
Average complexity
C3
Mappability confidence:
88%=75=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSMUST00000044556fB4047
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGCCTCTGCTGGAAG
R:
GAACAGCACAGCTCTGGCG
Band lengths:
118-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types