MmuALTD0010627-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:24831637-24835628:+
Coord C1 exon
chr2:24831637-24831737
Coord A exon
NA
Coord C2 exon
chr2:24835554-24835628
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCGG
5' ss Score
5.96
3' ss Seq
GACTTCTGTTCTCTCCTCAGGCT
3' ss Score
10.97
Exon sequences
Seq C1 exon
CAACTTGTTTTGGAGCACAGAGTTCTGAAGTCTCTTCCAATAAGAGCGTTTGTGTGGAAAGGAGCTGGCAAGACTGGAACTACAGCTGTCCTGCTGTAAAG
Seq A exon
NA
Seq C2 exon
GCTGGCTACTGTTTGGGTACCACCCTGAGCTCCTGGAGGCTGCATTTCATGGAGGAGCAGTCCCAGTCCACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833-0-2,1-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTTGTTTTGGAGCACAGAGT
R:
CTGGGACTGCTCCTCCATGAA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: