MmuEX0036069 @ mm9
Exon Skipping
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:24831553-24835628:+
Coord C1 exon
chr2:24831553-24831833
Coord A exon
chr2:24833646-24833741
Coord C2 exon
chr2:24835554-24835628
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGTATGTCTCAATTTCCAGATG
3' ss Score
10.39
5' ss Seq
TAGGTGAAT
5' ss Score
3.81
Exon sequences
Seq C1 exon
AGCAGTTGTGGGTTCCCCTTAGACCACGTGAGGGCTGTTTACAGGAGACGGAAGCACACAGAGAAAGCAGACGCTTCTGGAAAACAACTTGTTTTGGAGCACAGAGTTCTGAAGTCTCTTCCAATAAGAGCGTTTGTGTGGAAAGGAGCTGGCAAGACTGGAACTACAGCTGTCCTGCTGTAAAGGTTCGGGTACAGCAGTTTGTCTCAGCCTGTCTCCTTTTCGCCCTCCACATTGCTTTGCTTTCAGTCATGCAGAATGAGGAAGATGCCTGCCTTGAG
Seq A exon
ATGGATCTTTCCTTGGGGCTTCTTTTTTGTCCAGCGTCCTTTTTTGCTTTGAAGACTGCATTTCACTGGTTGCTTAGGCCGGGCTTGAACTCCTAG
Seq C2 exon
GCTGGCTACTGTTTGGGTACCACCCTGAGCTCCTGGAGGCTGCATTTCATGGAGGAGCAGTCCCAGTCCACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833_MULTIEX1-1/4=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGCTGTAAAGGTTCGGG
R:
TGGGACTGCTCCTCCATGAAA
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: