MmuEX0036072 @ mm9
Exon Skipping
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:24831553-24836312:+
Coord C1 exon
chr2:24831553-24831833
Coord A exon
chr2:24835723-24835810
Coord C2 exon
chr2:24836233-24836312
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTATCTCCCATCCTGTGTAGCTG
3' ss Score
8.21
5' ss Seq
TACGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
AGCAGTTGTGGGTTCCCCTTAGACCACGTGAGGGCTGTTTACAGGAGACGGAAGCACACAGAGAAAGCAGACGCTTCTGGAAAACAACTTGTTTTGGAGCACAGAGTTCTGAAGTCTCTTCCAATAAGAGCGTTTGTGTGGAAAGGAGCTGGCAAGACTGGAACTACAGCTGTCCTGCTGTAAAGGTTCGGGTACAGCAGTTTGTCTCAGCCTGTCTCCTTTTCGCCCTCCACATTGCTTTGCTTTCAGTCATGCAGAATGAGGAAGATGCCTGCCTTGAG
Seq A exon
CTGATGGGGATTGGAATTGGCGCCCTCCTTACCCTAGCCTTCGTTGGTATTACCTTCTTTTTTGTATACAGAAGAGTGAGAAGATTAC
Seq C2 exon
GACGGGCAGAACCCACTCCTCAGTACAGGTTCCGGAAGAGAGACAAAGTAATGTTTTATGGCCGGAAGATCATGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833_MULTIEX1-4/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCGGGTACAGCAGTTTGT
R:
TCCTCATGATCTTCCGGCCAT
Band lengths:
175-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: