MmuINT0123184 @ mm9
Intron Retention
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:24831553-24835628:+
Coord C1 exon
chr2:24831553-24831833
Coord A exon
chr2:24831834-24835553
Coord C2 exon
chr2:24835554-24835628
Length
3720 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
GACTTCTGTTCTCTCCTCAGGCT
3' ss Score
10.97
Exon sequences
Seq C1 exon
AGCAGTTGTGGGTTCCCCTTAGACCACGTGAGGGCTGTTTACAGGAGACGGAAGCACACAGAGAAAGCAGACGCTTCTGGAAAACAACTTGTTTTGGAGCACAGAGTTCTGAAGTCTCTTCCAATAAGAGCGTTTGTGTGGAAAGGAGCTGGCAAGACTGGAACTACAGCTGTCCTGCTGTAAAGGTTCGGGTACAGCAGTTTGTCTCAGCCTGTCTCCTTTTCGCCCTCCACATTGCTTTGCTTTCAGTCATGCAGAATGAGGAAGATGCCTGCCTTGAG
Seq A exon
GTAGGTAGACCAGACATGGGCGAGACCAAAACCCTTAAAGTCCCCAGACGGAGCATTTACAGAGATCAGAGGACCCTTTCCCTCAGGTGTCTACCGAGGCTTCCTGAAGATCTAGGGGAATGTGGGAGTGGTGACAGGTATTTCCCTGTCCCGAGCTTGACACTTGTTGCTAGACAATGGTTCTTCACAGTGTGGGCTATGGAACTTGGCTGTTAGATCATCATGAAGCTTTCTTTCCCCCCTCTTGTTTTTGTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCTTCCTCCACCACGCCTGGCTTTCTTTTCCCCTCTTAAAATCACAGTTGTTACTTCCTGTTTTCTCTTAGGACTTTTGTATTTTAGAGTCTTTTTATCAGTCCAACACTAGCCACATCCCAAAAGCCATTATTATTATTATTACTATTTTGACACAATGTCTCTCTACATCTGTGGAACTCACTCTAGAAAAGAATGACCTTGAACTCGTGTAGAGACCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTTTTTTTTATAAGCAAGAAAAGTAAATCCATAAGAATAACTGTAAAAAGCTAAACAGGCTGGGATGGTCCACTGCGGCAGACTGTACCTAGGTGCCTTTCCTTAGATAAAGTAAACTCCGAAGAACATAGAGGGCGTGGTTGCTGTGCTCTTGTGCACCCCAGTTGATATGGTCATGAGAGCTGAGCTGGGGCAGTGGAGAAGGGAGGTGAGTGCCTCAGTTTTGAAACCAAAAACATACTGGCTCTATACACTGTACAACAGGGCTCTGGCTGACAATAGACGGTGTGCAATAGTGATCCCACAGATTGTATCAGTTGGTGGGGTAATAGTACCTTGTGACACTCGCACCTTGTGACATTCACACCATGAGGAAGTAGCCTAAGAACAGACTGGGCCAGTCTGTGGTGGCCAATGCCTTTAATTCCAGCACTGCCAAAACAAACAAACAAACAAACAAAGAACATACTGGTTTTGTTTTCGAGACAGGGTTTTTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGATCTCCTTGAATTCAGAAAGTTCTCCACCTGCCTCTGCCTTCCCATTGCTGGGATTAAAGACATGCAACACCAACTCCTCTGGAACATACTTAGTGGAACATGTTCGTCCTCATCCTTAAACAATACTCAATTGTTTGCCTCCTGAACTAAGATCACAAGGATGAGTTTTCTAGGCAACCCACTTACTCTGTTAGGATGCAGAACTGTGCCTTTGGAGTTCTTTGTTGTGTGACCTTCAGCTCTCCTTGGGTTTCTGGAGGGATTGCTGAGTCTGAGGCATGCTGTTTATTTTTAAGGCTAGGCTTTGGTAATTAGAAGATAGGTAGAAGCTGCAAAGGATGGGTAAATGGGCCCCTACACTATTCAGTTCCTAACTTTTTGGGAGAAAGGGGTGGCTGGATATTGGAGGACTCAGGGACAGATGCAGGTCTGGTTTTTTTTTTTTTTTTTTGTCTTTAGCTTTTGGGGACAGCGTCTATTGTGGGTCACCCCTCACCCTTACATTCTGAGTTTTTACTTCCCTGCCGCCTTCCCTCCCCTGGATCTGGTCCTTAGACATCTAAAATCCTGTCAATGCCTTCTTGGAGACCACAGGTGGCAGAGACAGGATTCTCTTTGAGAAGTAAACTGACATTGTATGTCTCAATTTCCAGATGGATCTTTCCTTGGGGCTTCTTTTTTGTCCAGCGTCCTTTTTTGCTTTGAAGACTGCATTTCACTGGTTGCTTAGGCCGGGCTTGAACTCCTAGGTGAATATGATCCTCTTGCCTCTTCCTTTCAAGTAGTTCATGGTATACTTTTTTTTTTTTTTTTTGGTTTTTCGAGATAGGATTTCTCTGTATAGACCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCACCAAATGCTGGGATTCAAGGTGTGTGCCACCACTGCTATACTCTTGACGCACTCTCAGGAGTTTCTGAGCATTCATTCTGATTGGCTTTCATGGATTGTGGGGTTTGTGATCCTAGTCCTATTGGCATCCAGAGGAACCAAGACATAGCTTTGACCTGCCCTAGGCTTACTTCTTGAGGACTGGAGAGCCAGAAGTCGGGTTTATTATTTGCCAGTAGCAAAGTGCTACCCATCCCAGTGCCAAAAGAGACAGGGTGCTGCTTTTCTGTCCTTACAGTTGAGCTCAGAGGGTCTCAGCACCCCTGCAAGAATTGATCTTTTTTCTAAAATTAAAAATATAGTTATTTGGGCTGGAGAGATGGCTCAACAGTTAAAAACACTGATTGCTCTTCCAGAGGTACTGAGTTCAATTCCCCAAAACCACATGGCGGCTTATAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTATGAGCAACAGTGTATTCATATACTTTAAACAAAAAAACAAACAAACAAATCTTAAGAAAAAAACCAAACAAGCAAAATTTAAAAATATATATATATAGTTATTGGGCTAGAGTGATGGCTCAGAGGTTAAGAACACTAGCTGTCAGAGACAAAGTTTGGAGTTGTGACGAAAGGATGGACCATCTAGAGACTGCCATATCTGGGGATCCATCCCATAATCTGCTTCCACACGCTGACACCATTGCATACACTAACAAGATTTTGCTGAAAGGACCCAGATATAGCTGTCTCTTGTGAGACTATGCCAGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCATGGATCACATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGAGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCAGAGCTCTTGACTCTAGCTGCATATGTGTCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAAGCCCATTGTACACGCAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGTGGGAGTGGGTGGGTAGGGGAGTGGGGGGGAGGGTATGGGGGACTTTTGGGATAGCATTGTAAATGTAAATGAGGAAAATACCTAATAAAAATACTTAAAAAAAAAAGAACACTCTAGCTGTTTTTCCAGAGATTTGGAGTTTAATTCCCAGCAATCACATGGTGGCTCATCACCATCTATAATGAAATTTGGTGCCCTCCTCTGGCATGCAGGCAGAACACTCTACATAAGCAAATGTTTAAAAAAAAGACAAGTATAAATCAAGTTATTACATTTCTTTGTATATGTGTGTAACTTTGAGAAGGTAATAGCATCTACATAGTGTGGAGGTGAGAGAACAGCTTATGGCAGTCTGTTCTGTCTTGGACCGTAGGACTTTCCAGGATAACACTCAGGTCCTCAGGCTTGGCTGCAGATGCCTGGTCTGCTGAGTTGTCTGGTAAGCCCCAGTTCTCAGAAATCTTCAGGGTATTGATTTCCTTCCTAGCTTCTGACTTACTTTTGTTCTCTAATCAAGCTCAGACTGAGAAATTGGGCCCCTTGTCTGTCCAGCCTGACTTCTGTTCTCTCCTCAG
Seq C2 exon
GCTGGCTACTGTTTGGGTACCACCCTGAGCTCCTGGAGGCTGCATTTCATGGAGGAGCAGTCCCAGTCCACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833-Pnpla7:NM_146251:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: