HsaINT0128594 @ hg19
Intron Retention
Gene
ENSG00000130653 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:24768]
Coordinates
chr9:140442037-140444986:-
Coord C1 exon
chr9:140444620-140444986
Coord A exon
chr9:140442112-140444619
Coord C2 exon
chr9:140442037-140442111
Length
2508 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CCCCATGCTCTCTGCTGCAGGCT
3' ss Score
9.3
Exon sequences
Seq C1 exon
GCTGCCCCCATCCCCGCCGCGCTGGGCCTGGCTCCTCTTGACCTGCTTGGATACGCCCCATCTGGCTGCTGTTCTGGGTTCCGGGACAGCCACGTGAGGGCTGTTTACAGAGGGAAGGAGGTGGCTCCTAGCAGATGACAGACACTTCTCAAAAGACAGCTTTTCTTCCTGGAGAACAGACTTTTTCAGCAGGATTTTCCTTTCAGTGAAACATAATTTGACTTGAAAGGAACCCAGGGAAAAGTGTCCAGGTGTGAGCATGAGCGGGTAGAGGTGTGCCCTTGTTTGCTTCAGGCTGTCTGCTTTTCGCCCCTGACTGTTTTTTCTGTTTCTGGCCATGGAGGAAGAGAAAGATGACAGCCCACAG
Seq A exon
GTATGTAACTCGGGGGACCAGATGCCTGGATTTCCCAGTTGGGGGGCATTTCTGGACCCAGAGAAGGGTCCTCTTGGCGTCTGCTCTGCCGCGCTCTTTGGCCCCGTGGCTTCTTGGCGCCTGAGGACTGTGGGAGTGGTGGATCTGGCCCCTCTCTGCTGCCTGTCACAGCTGCCAGCACTTGTTAGACGCGCCTGTCACAGCAGACAGCCAGTGGTGGCCCATGGGCATTGTTCACAGCGAGGGCAGCCAGCGGTGGCCCATGGGCATTGCCTGAGGCCTTGTCTTTTCTTCCCCTAAGGTCACAGTTGCTACTTCCAGTTCCTTTAGGACTTTGCCTGATGGTTTTGCTTAGAACCTTTTTCTGTGTTTTTTTTTTTCCCAAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGTGTGCAATGGTGTGATCTTGGCTCACAGCAACCTCCGCCTCCTGGGTTCAGGCAATTCTGCCTCAGCCTCCCGGGTAGCTGGGACTACAGGCACCACGCCCGGCTAATTTTTGTATTCTTAGTAGAAACGGGGTTTCGCCATGTTGGCCAGGCTGGTCTTGAACTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCGCCCAAGCTGGATTGCAGTGGCACGATCTCAACTCACTGCAAGCTCTGCCTCCCAGGTTCACGCCATTCTCCTGCCTCGGCCTCCCAAGTAGCTGGGACTACAGGCGCCCACCACCACGCCCGGCTAATATTTTTTTGTATTTTCAGTAGAGACGGTGTTTCACTGTGTTAGCCAGGATGGTCTCGATTTCCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCAGGGATTACAGGCATGAGCCACCGTGCCCGGCCTAGTCTTGAACTCTTGACCTCATGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGACACTGTGCCCAGCCCTAGAATCTTTTTCTTAGTCAAACATCTGTAGCCACATGGCAAAGGCCTTATTTCCTAAACCAGAACACTGGACCCATTAAAGCAACAGTGAAAAGCTAGAAAAGGCTGAGCCGCTCCACCGCAGGAGAGCCTGTGACCAGGTCACGGGCCATCGCGTGATAGGCCTTCCTTGGATAATCGGTCCCAGAAGCGGTTGCTGGGCTGAGGGACTCACTTCGCTTCCTTAAGTGAGGGACATGGTCGTAGGTGCTTCTCTGCTCCCCACCTGGTTGAGAGTGAGCGTAGGGGTTCCCCTGTCCTGAAGCAGAAGCTCCCAGGGCTTGTATTTGCTTCTGAACCAAGTTCGAAGGGCTCAGCTTTCTGGGCACGTCCTCATTCTGTCTTGGTGCAGAATTGTGTCTTTAAATGCGTTTCTGAGTGCTCTTCTGACTTCCCTGAGTTTTCTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTAGCACAATCTCAGCTCACTGCAAGCTCTGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCACCACCACGCCCGGCTAATTTTTGAATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGGCGTGAGCCACTGCGCCCGGCCCTTCCCTGGATTTTCTGGCACGGATGGGAGTCCTGCTCTCTGCAGTGAGGCGGGGGTGGGTGTTGTTTTAGGCCTTGGCTCTTGTGTAGAAACTTTCAGGCTGAACCAGTGGCTTCCCCTGCCCTATCCGGTTCCTGGCTGCCTGGGAGGAAGGTGTGATGCCAGCAGGAATGGAGAGGGCTGCCTGTCTGGCTGGTGTCGTCTTCTCGTCTTCTCGTTTTCTCTTTCACTTCTTGGAACCACCAGCGTCCTCTGCTGTCGTTCACTCACCATCCTGCCCTCACCCTCTCTTCCCTCCCTCCCGCGGACCTGGACTTCTGAAGTCCTGCTGCTCCAGGAGACTGCAGGACACAGAGCCTTCTCGGCCGCTGCCTCCTTGTTTGGCATGTGAACTGGTGTTGAATGTTCTCAGAATCCAGATGGCTCATAGGGGTTTTGAGCACTGCTCCTGCTGGGGCTGAGGCGACACTGAGAGGGGGGCCTTGGCCTCCCCTTTGGCCAGGCCTGCTCCCTGAGACCTGCATCCCAAGGATTGCATCACCAGCATGTGGGTGTGTTAGTGATGCCTGGGGCAGCCGCTGGCCCTGCCCCACTGTATCCCAGTGACTGAGGGAGCCAGGTTGCTCTCTGAGTGCTTCCTAGCAGGGGGCTCAGAGGACCCCGGCACCCCGGGCGAGATCACTTCTTCCCAGAAGTCTCCAGGGCTGCTGACTTCTCCCCTAACTCCCAGCTCTCCTCCTGCTGCTCTGAACAAGTTCGGGCTGGGAAGCCTGTCCATGCCCACCTGACCCCATGCTCTCTGCTGCAG
Seq C2 exon
GCTGACTTCTGCCTGGGCACCGCCCTGCACTCTTGGGGACTGTGGTTCACGGAGGAAGGTTCACCGTCCACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130653-PNPLA7:NM_001098537:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF094725=MtrF=PU(11.1=30.0)
A:
NO
C2:
PF058086=Podoplanin=PU(22.5=36.0),PF041569=IncA=PU(6.8=40.0),PF094725=MtrF=PU(22.6=28.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)