DreINT0116803 @ danRer10
Intron Retention
Gene
ENSDARG00000040002 | pnpla7b
Description
patatin-like phospholipase domain containing 7b [Source:ZFIN;Acc:ZDB-GENE-050309-66]
Coordinates
chr5:24566298-24566794:-
Coord C1 exon
chr5:24566751-24566794
Coord A exon
chr5:24566367-24566750
Coord C2 exon
chr5:24566298-24566366
Length
384 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
ATTTTTATCTCTTCTTCTAGGTG
3' ss Score
12.23
Exon sequences
Seq C1 exon
ACATTATGGAAAATGAAGAACAAGATGATACATGCAGATCTTTG
Seq A exon
GTAAGTTATTTCAATGTGGAGTTTTTGATTTTAAACTAATGGCTAACGACAGTGCAAATGTGTATCAGTGAGTCTTTTTTAAATTAAAATAAATAAATGCATGCTATTTATTCGCAATAAATCTGCTTTCGAACTTAGCTAACTTGACATAAGCTTAATTGAAAAAACAACTCCATTAGAGTAAGCTGGACTTTGTCCAAAAGCATGTACCCACTGAAGTGATTGGGCAAGGCTGTGATTAGAAAGATTGTCCATTTCCTTGATGAAATCAGAAGAGATTGAGACCAGAGATTGAACCAGTGACCTTTATTTTAGCTGTTGTCAATTGCTCTATTGTGTACAATTATGATTTTGATTTTGTTATATTTTTATCTCTTCTTCTAG
Seq C2 exon
GTGCCATCTGGTCATGAAATCAAGGCTCGTGTGCAACACTTCATCGAGGATCAGTTACACACCACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040002:ENSDART00000145061:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.130
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]