DreEX0056706 @ danRer10
Exon Skipping
Gene
ENSDARG00000040002 | pnpla7b
Description
patatin-like phospholipase domain containing 7b [Source:ZFIN;Acc:ZDB-GENE-050309-66]
Coordinates
chr5:24564609-24566366:-
Coord C1 exon
chr5:24566298-24566366
Coord A exon
chr5:24566115-24566199
Coord C2 exon
chr5:24564609-24564691
Length
85 bp
Sequences
Splice sites
3' ss Seq
GTTCTCATTTCACAATGCAGTGG
3' ss Score
4.02
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGCCATCTGGTCATGAAATCAAGGCTCGTGTGCAACACTTCATCGAGGATCAGTTACACACCACCATG
Seq A exon
TGGACTGGTGTGCTGATCGGAGCTGCAGTTGCAGTTTCAATTCTAAGTATTTTTGCCTTATTCTTTTACAGAAGACACAAGGCTG
Seq C2 exon
GAGAAGGTCAATCTGAAGGTCCTAAATATCGTTTCAGAAAAAGAGACAAAGTGTTGTTTTATGGCAGGAAGATAATGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040002-'3-4,'3-2,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCATCTGGTCATGAAATCA
R:
CTTCCTCATTATCTTCCTGCCA
Band lengths:
152-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]