GgaEX6014825 @ galGal4
Exon Skipping
Gene
ENSGALG00000008736 | PNPLA7
Description
patatin-like phospholipase domain-containing protein 7 [Source:RefSeq peptide;Acc:NP_001124214]
Coordinates
chr17:1587217-1589395:+
Coord C1 exon
chr17:1587217-1587273
Coord A exon
chr17:1587730-1587817
Coord C2 exon
chr17:1589313-1589395
Length
88 bp
Sequences
Splice sites
3' ss Seq
CCTATGAATTCCTCTCACAGCTG
3' ss Score
7.49
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GCCATGCCAGCAAGTGGAATTCTTCAGTTTGTAGAAGACAGAATACAGAGTACTATG
Seq A exon
CTGACTGGAATTGCCATTGGAGCTGCAGTTGCACTGTTCCTGATAGGAATTGTTGTGTTTGTCATTTACAGAAGAGTGAAACAATCCA
Seq C2 exon
AACAACTTCAGCCACATGGTCCTCAATACAGATTTCGCAAGAGAGACAAAGTGATGTTCTATGGGCGGAAGATCATGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.179
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAAGTGGAATTCTTCAGTTTGT
R:
TTTCTCATGATCTTCCGCCCA
Band lengths:
132-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]