BtaEX6047490 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105598761-105599479:+
Coord C1 exon
chr11:105598761-105598787
Coord A exon
chr11:105598943-105599030
Coord C2 exon
chr11:105599400-105599479
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTGTCTATGACCTTGCCCAGCTG
3' ss Score
3.68
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
ATGGAGCAGCATTCCCAGTCCACCATG
Seq A exon
CTGCTGGGGATTGTGATTGGAGTCCTCCTGGCCCTGGCCCTCATTGGCACCACCATCTTTTTTGTGTACAGAAGGGTTAGCCAATTCC
Seq C2 exon
GACAGTTGCAGCCCAGTCCTCAGTACAGGTTCCGGAAGAGAGACAAGGTGATGTTCTACGGCAGGAAGATCATGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF058086=Podoplanin=PU(16.2=66.7)
A:
PF058086=Podoplanin=FE(78.4=100)
C2:
PF058086=Podoplanin=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGCAGCATTCCCAGTCC
R:
TCCTCATGATCTTCCTGCCGT
Band lengths:
105-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]