MmuINT0029990 @ mm9
Intron Retention
Gene
ENSMUSG00000039648 | Ccbl1
Description
cysteine conjugate-beta lyase 1 [Source:MGI Symbol;Acc:MGI:1917516]
Coordinates
chr2:30043735-30047592:-
Coord C1 exon
chr2:30047445-30047592
Coord A exon
chr2:30043885-30047444
Coord C2 exon
chr2:30043735-30043884
Length
3560 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
TGACCGTGCTGTTCTGGCAGGGT
3' ss Score
8.12
Exon sequences
Seq C1 exon
GGTGGAGTTTACCAGACTGTCCAAGGAGTATGATGTCGTGAACTTGGGCCAGGGCTTCCCTGACTTCTCACCGCCAGACTTTGCTGTGCAAGCTTTTCAGCAGGCTACCACTGGGAACTTCATGCTCAACCAGTACACCTCAGCGTTT
Seq A exon
GTGAGTCTCCTGCCTCTCCTGAAGGTCCTGGGGCACTGACACAGCCAGGCAAGGCTCGAGGGACAGAGCCCAGTTCAGCGTCCCCCTCAGTTACTGAGAGTCCTGTGCCCTGAACCTCAGGTCCAGGGCAGAAGGCAGATCAGGAACCTTCTGATCCAGGCTGTGGGAAAGGAGGAAGTGGCACATGGTAGTAGGAAGGGAGCTTCCAGGAGCAGGTGGTACCTCAACCAACCGGGGAAAGACAGGCTGCCTTCAGCATCAGACTAAATCCCAAGGGCTTTGTGGGGAGCACACAGTAGACATTTGCCAACACTGGACTACAACAGTGCTTTTTTTTTTTTTTTGTCGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTAAAACAGGGTTCCTCTGTGTAGCCCTAGCTGTCCTGGTACTCACTCTGAGACCAGGCTAGCCTCCAGTTCACAGAGATCCACCTGCCTCTGCCTCCTGAGTTTTGGGATTAGAGGCATGCGCCACTACTGCTGGGTAGTGTAAGACCCCCGAAGCTGGGCCTCTGCTCAAGTCCCGGGATGAGCTGGCCAGCACCCCAATGACTTGAGAGAAAACCACACCTGATGCAAACTGCAAGAGGTTTTATTATCAGCTAGCTAGCTGAGGACGAGCTCCTTGAGCTGAGCAAGGCAGGGGAGTTAAACCCCGAGCTGTAGCAGTAGGGGGCTTTTAACAGCTAGCTGAGGAATTGGGAGGAGTTGGGCTACAGCTCTTCTCTGCGGGTGTCCTTGGTAAAATTACAATTATCGCATCTCTGGTTGTAAGGTATAGAAACAAAAAGGCTTTTTGCTGGCAAAGAGCTTCTTTCTAGCTGTATTTTTAGAGATCAGAGAAAACAAGCTGGGTGGGGGGGATGTTTTAGAGGCTTTAACTCCCAGGGAGAAACGCTCTAAGTCCAGGTCTCACATTCCCCACTCCTTCTAGTATATAGTTCTAATCTTAGAACTAGGGAAATTAAACCTCTGTCCCAGCTGCCAAACAAAGCCAACATGAGGTCGCAGCTTTAGGATTTGTAACATTGAGAGCCTCAGAAGCCCCTCAAATGATACTAAAGAGTCTCTCACCAGAGGTAGGAGGGAGGGAGGAGGTTCCTGTGCTACACCTGGTGAGTGTGAGCAGGGCCAGGCCGGCAGGGCCAGAAGGGGGAGTTGGGTGCATGCAGGAGGAGCAACGGAGCAGCAGGGCTTGTCAGAAGCACCAGGTAGGGTCCTTTCCATCTGGGTTCAAGGTTGCCAGAACGGTGGCGCCAGACCAGGACAGGATCCCCTATTTGAAATTTATGTGGGACCCTCCCAGGGAGAAATGCTCTAAGTTGGGGTCTCACAGTAGAACAGCACTTCTTAAATTTTGCAGTCTCAATATTGCCTGGAGAGAATTTCCCATATTTTTGCAATGCTTACTATTCTTTACCTTGAATGGACTCATCCTGTATGTAATGCAATGTAAGTTGATGCTGTCAATAAGGAATGTATCCTGGACATCCTTCCAGTCAAAGTGTCAGTCCCTTTATCCTTTAGTGTCCCCCAGCCCAGGGCCTTGGGGTGCCAGCTCCGTGCAGCTCCTCGCTCCCTTTAGAGTTTCATGTAGTACTGTGCTGACATCATCCCCTGCTTCCTCCACCTCCGCCTGTGCCCAGCACTCCCTCCACACTCACCAGCTCTTCCTCACTTATCACAGTTAAAATGTGTGTAAGGACACACAACACAATGCGTGCGAAGGCCACTTAGTACTCCTCTGTGTAGTGTTTAGGGCTGACCACTTGAGACTAGATAACTTATGAGGGCTCACCACTGGAAAAGAGTGATTCTCTTAGCACCAGTGATTGGGCAGCGCCTTGCGGGACGGCCCACATCCATGTTGGCGTGTCAACTGGTTTTGTTCTTGTGCAGGTTTTGTTTAGGCAGCGATATTATTGAAATTCTATGGCTTCCCTGTCCTGTATAGAAGACACTGTCTCAAGCAGACATCCTTGTCCCTGGCTCCTACAGTCTTCCCGCCCACTCTTCTGTGATGTCCCGAGCCTTAGGTGTAGGAGTTTCAGTGAGGATGTATCAGGTGGAGCTTTGTTCTCTGCATTTCCTCACATCTTTTAATGGCTATTTCTCTTTCATTACCCAGATGTGCCATGTGTTAATTGCCCAGTCTATCTATATTAGTGGGCTGCTTCCATGGCTGTTATAAACATTGCCAGTTTATCTTTAAAAGCATATATGTCTTTGTTATTGTTATTACTATTATTATTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCGTGTGCCACCACCGCCCAGCTTGTTATATTATTTTAAATATCCATTTTTGTTATTTTTAGTTGTGTGTGTTTGTGTGTGGGTCTATGCACATGAGTGCAGGTGTCCCTGAAGCCCAGAGGTGGCAGATCCCTCTGGAGCTGCAGTTACAAGAGGTTGTGGGGCTGTCTTATATGGGTGCTGGGACTTGAACCCAGGTCCTCTGAAAGGACAAGATATGCTTTTAGCCACTGAGCCACTTCTCCATCCCTTATGATAATACTTGCAGGTAAAATTAATGACTTGAAAGACAAATATGAAGCTGGGCGTAGTGGCGCACTCCTTTAATCCCAGGACTTGGGAGACAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCTAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAGAGACGCAGTGGAGGGTGGATCTCTGAGAATTTGGTCCCTAGATTCCACATGGTAGATGAAGAGAGCTACTCCTAAAATGTCCTCTGACTGCCATATGTGTGGTAGTATACATATGTATGTACATGCTTGTATACACACACACACACACATACACTAAATAATTTTTTCTTTTGAAGTAGGGTCTCTCTATGTAGTCTTTGTTCTCCTGGAACTCACTCTGTAGACCTGGCTGGCCTCAAACTCAAATATGTCTACCTCTGCTTCCTCAGTTGCTGGGATTAAACACATGCACCACCACTCCTCTCCGAATAAATGTTTTGTTGTTGTTATTTTGTTTAAAAAGGAAAAAAGCCCATGTTATTCCTGCATCTCATTCTCTACGACCTTGGGCAAGACAGTTTCTTCGGCATTCTATTTTGTAATGCACCTCAACAAATAATCTGTGGCCCCAGGGCTGCGGGGGGTCAGGTAGGCACAGGGAAGTGTGGGTTTCTGCTGCCCTGCTGTGCTATAGAAGGAGACAGACACAATGTCAGCTTCCCCCACATACCAGCTCTGGGTCTGACTCCATGGCCAGGCTGCTAGAGGAGATGAAACAGGTTAAGCCCAAGGAAGCTGACTTCTGCCTGAGTCTAGCTGAGCTGGTGCAGTCACGGCTGATGCTGGATTCCTGACCGTGCTGTTCTGGCAG
Seq C2 exon
GGTTACCCTCCACTGACAAAGATCCTGGCAAGTTTCTTTGGCAAGCTGCTGGGACAGGAGATGGACCCACTCAAGAATGTGCTGGTGACAGTGGGAGCCTATGGGGCCTTGTTCACAGCCTTTCAGGCCCTGGTGGATGAAGGAGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039648-Ccbl1:NM_172404:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PU(10.1=78.0)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: