HsaINT0028665 @ hg38
Intron Retention
Gene
ENSG00000171097 | KYAT1
Description
kynurenine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:1564]
Coordinates
chr9:128838218-128842801:-
Coord C1 exon
chr9:128842654-128842801
Coord A exon
chr9:128838368-128842653
Coord C2 exon
chr9:128838218-128838367
Length
4286 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
AACCCCTGCTGTCCTGGCAGGGT
3' ss Score
8.17
Exon sequences
Seq C1 exon
GGTGGAGTTTGTGAAACTGGCCAGTGAGCATGACGTCGTGAACTTGGGCCAGGGCTTCCCGGATTTCCCACCACCAGACTTTGCCGTGGAAGCCTTTCAGCACGCTGTCAGTGGAGACTTCATGCTTAACCAGTACACCAAGACATTT
Seq A exon
GTGAGTCTCCCCATCTCTCGTGGAGGCACTGGGGGAGGAAGGGGACAGGGCTTTCTGGACTTCAAGCCCACACAGCTGTCAGGCTTCAGGGGACAGAGCCAGGGGATTCTGTATGACCATAGTTCAGTGTTTACTGAGCGTATCCTCTGTCCCAGAGCCTTCGCCTCGTGGTCTAGTGGGGATGGCAGACAAGAAGCCAGTAACGACAGGCAGTTGATACATGATGTGATGGAGGAGGATGGGATATCGTGCGAGTAAGAAAGAGGGAATGAAACCTGGGGAGGGGGCTGGAGAGATGCACGAAGACTTCCTGGAGGAGGTGACACTTAAACCAAGTCCTGAAAGATGAGCTACTGGTTGGATTACACAATAAATCCAAACGTTTTCCGGAAAGGACCACATAGTAAATATGTGACACTGCTTGGATTAGAACAGTGGTTCTTTTTTTCTTTTTCTTTTTTGAGACAAGGTCTCACTCTGTTATCCAGGCTGGAGTGCAATGGTGCGATCATGGTCCACTGCAGCCTTGACCCTGCCAGTCTCAAGTGGTCCTCCCACCTCAGCCTCTGGAGTAACTGGGACTACAGGTGTGCATCACCATGCCCAGCTAATTTTATTTATATATTTATTTATTTATTTTTGAGTCAGGGTCTCACTCCTGTCACCTAGGCTAGAGTGTAGTGACATGATCACGGCTCACTGCAGCCTGTACCTCATGGGGCTCACATGATATGCCATTTCCTGGGGCTCATGTGATCCTCCCACCTCAGCCTCTAGAGTTGCTGGGACAACAGGGGCATGCCACCTCACCCAGCTAATTTAGAGACAGGGTTTCACCATGTTGCTCAGACTGGTCTGAAACTCCTGGGCTCAAGTGATCCTGCCACCTCGGCCTCCAAAAGTGCTGGGATTACAGGCGTGAGCCACTGAACCCTCATTCTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTCGCCAGGCTGGAGTGCAGGGGCGCAATCTCGGCTCACTGCAACCTCCCCCTCCCAGGTTCAAGAGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTATAGGGGTGCGCCCCCACGCCCAGCTAATTTTTGTTTTGTTTTTTTTTTAAGACAGTCTCGCACTGTCGCCCCGGCTGGAGTCTGGAGTGCAGCGGCACGATCTCGGCTCACTGCAACCTCCGCCTCCGCCTCCGCCTCCGCCTCCTGGGTTCAAGCCATTCTCCTGCCTCAGCCTCTTGAGTAGTTGGGATTACAGGCGCCCGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCCGACCTCGTGATTCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCCATTTTTTGTATTTTTAGTGGATACTGGGTTTCACCATGTTAGTCCGGTTGGTCTCGATCTCTTGACCTCGTGATCCACCCACCTCAGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCGACCGCACTCGTTCTTTTTAATGGCTGCATACTGTTCTGTTGCCTGGATGTGCCATAATTTATTTAAGCAGTTCTGCACTGATGGACTGCTTCTGCTATCTCAATATCATAAGCAATGCCACAGCAAATATCCCTGTGTGGACATCTTTGTATACATATGTATTTCTCTAAGATAAATTCCTGGAGGTAAAACTAGCAAAAGAAAGACTATAAATATTTATAAATACAATAGGTGGATATTGTTAAGAAACAGTGTGTGCCTATAATCCCAGCTACTTGGGAGTCTGAGGCAGGAAGATTGTTTGAGCCCAGGAGTTTGAGGCCAGTGCAACATAGTGAGATCCTGTCTGAAAAATAAACAAACAACTAAGTAAATAATTGCCCTCCAGTAAGGTTTACTCATTTACATCCCTGCCAATAGGCTGGTCTCAGAGCTGGTTGGAAAGTTCCTTCTTTGATCCAAAAAAAAAAAAAATCATTTGGGTATGTATCTTTTTCTTTTCTTTCTTTCTTTCTTTTTTTTTTCTTTTAACTAGAGACAAAAGCTGGGTATGGTGGCTCACGCCTATAATCCCAGCATTCTGGGAGGCTAAGGCTGGCAGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGCCCAACATGGTGAGATCCCATCTCTAATAAAAATTAGCTGGGCGTGGTGGTGGGTGCCTGTAATCCCAACTACTTGGGAGGCTGAGGCACAAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGGGCCGAGGTGGTGCCATTGCACTCCAGCCTGGGTGACAACAACAACAACAACAACAAAATAGAGACAGGGTCTCCTTATGTTACCCAGGCTGGTCTCAAACTCCTGGGCTCAAGCAATCCTCCCACCTTAGCCTCCCAAAGTGCTGGGTTACAGGCATGAGCCACTGTGCCCAGCCTCATTAAATATTTTACCTCTTTCTTGTATGTTGCAATATTTTTCTCTTCCTGTTTTGACCTTGCTCATGGTGCCTTTTATTTTTATTTAATTAATTAATTTATTGTCTAAGACAGAGTCTCAGTTTTATTACCCAGACTGGTGTGATCATAACTCACTTCAGCCTTGATCTCCTGGGCTCAAGCAATCCTCCTGCCTCAGCCTCCCGAGTACCTGGGACTACAGGCACGTGATACTACACCTGGATAATTTTTTTGATTTTCCATCAGTAGAGACAGAGTCCCTCTGTGTTGCCCAGGCTGTTCTCAAACTCCTGGCCTCAAGCAACCCTCCCGCCTCATACTCCCAAATGCTAGGATTACAGGCGTGAGCCACGGTGCCTGGCCTGTGCCTCTTGTTGTACAGAAAATTTTTATATTTGTGTGGCCAAATCTGGTTTAGTGAGTTACTGAGTTGAGTTCTAGATAAAGTTTCAATCACTTGGCTTAGCCTTGAGTATTTTTGTTTTGTTTTGTTTGTTTTTGTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTTCTGCCTCAGCCTCCCGAGTAGAGCTGGGACTACAGGTGCCCGCCACCATGCCAGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCTTGAGTATTTTATAAGTGTCCTCAGCAAACAAGTTTCTGGATCTAATCTTCCTCTCAAAAAGGGGTGCTTACAAAGCTGCAACATGAGGTTCCTGACTGTCAACTGTGTGTGACTTTAGACAAGTAATTTCTTCTCTCTGGGTCTCTATTTTTCTACCTGTCAAATAGTGGGCATCAGGCCAGGCACGGTGGCTCACATCTGTAATCCCAGCACTTTGGGAGGCCAAAGCAGGCAGATTACCCAAGGTCAGAAGTTCGAAACCAGTCTGGCCAACATGGTGAAACCCCGTCTCCACTAAAAATACAAAAATTAACCAGGCATGGTGGTGCGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCGGAGGTTGCAGGGAGCCGCGATTGTGCCACTGCACTCCAGCCTGGGTGACATGAGTGAGACCCTGTCTCAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAAGCCTCTCCCGCAAAGCTGCTGGGAGGATCAAGTGGGCACAAACATGCTTCTTAAACTTACAGATGTGGAAAGTGGGGAGTTTCTACTGCCTTGTGGGCTCTTGGACTGAGGTTCATGGAGGCAAGCACTTCCTCTGGTTCTCTGCTAAATCCCCGCCCTGGGCTTCGGGCCTGGCACAGAACAGGCCCTGTGGCAAATGCTGGTGGAGGAGATGGAAGAGCTTAGCACTGGATATCTGAGTCAGTGCAGGCCTGGTGGTTGGCACCCTGGAGTCTGGGACCATATAGATTGTGTGACCTTTACCTCCCAGAGTACACAGGATCACAATAGCACCTGCCTCTGGGTTGTTGAGAGGATGAGATCAAAGAAATCCCACAAATAGCTTGGTGTGTAGAGGAATCCAGAGTGTTGAAAGCTGATCTATTCCACGTCCCCTGGGGCCCAGGCTACCAGTACCTGACTTTGCCCCCAGGCCTGCTGCTGGAAGGTGCTAGAATTGCCTGGATACAGCTGGGCCGGAGGATGGGCCCAGGCTGAGCTGGACAGTTAACCCCTGCTGTCCTGGCAG
Seq C2 exon
GGTTACCCACCACTGACGAAGATCCTGGCAAGTTTCTTTGGGGAGCTGCTGGGTCAGGAGATAGACCCGCTCAGGAATGTGCTGGTGACTGTTGGTGGCTATGGGGCCCTGTTCACAGCCTTCCAGGCCCTGGTGGACGAAGGAGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171097:ENST00000302586:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PU(10.1=78.0)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(12.6=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development