GgaINT0125515 @ galGal3
Intron Retention
Gene
ENSGALG00000004604 | CCBL1
Description
NA
Coordinates
chr17:5916617-5917543:-
Coord C1 exon
chr17:5917390-5917543
Coord A exon
chr17:5916767-5917389
Coord C2 exon
chr17:5916617-5916766
Length
623 bp
Sequences
Splice sites
5' ss Seq
TTCGTGCGT
5' ss Score
3.83
3' ss Seq
CTGTTCCTCTCGCCCCACAGGGC
3' ss Score
12.84
Exon sequences
Seq C1 exon
GGTGGAGTTCGTAAAACTGGCTGCCACCTACTCCACGGTCAACCTGGGCCAGGGCTTCCCCGACTTCCCCCCACCAGAGTTTTTGAAGGAGGCGTTCAGCAGAGCGGTCAGCGGGGAGGAGGAGCACATGCTGCACCAGTACACCCGTGCCTTC
Seq A exon
GTGCGTGGACAGCCTCCTGCTCGGCGGTACCGCGAGCCTTGCCCATCAGATGGGCCATGAGCAACAAGGCATCTTGGCTGGGCATGTGGGCTGGGTACCCCCGGCTGCTGTGGTGGGCTGTTGGACGTGACCCAGATTTGCATTCCCAAACATCTCCTTCTTGCAGTAGCTTCCAGCTTTGCCTCTATCTTCTTTCCAGTATCCCGCTTTGCCATTGCAGAGGTCAGGGTGGCAGTCAGTAGTTTCTGAAATGCCCCTCTGACAGTGCTGGCTGGGCAAGGAGAAGCTGCTCTCATTTAAGTGGGACTTCTGTCACCTGCAATTGCAGTGACAGAGCTGGCAATAGCTGGAGTAGCTTGCAAAGAAAGAGGAGAGAATGCTTTCAGGAAGGACCATGCCTCTGCTCTGCTTCAGGGACACATTGGCTGATGTGGAGGACCAGCAGGCACAGGGTTTATTGCTAAAGCTCCCATGGCACAAGGCACTTGAGTATGCAAGGTGCAGCCATCGTGGTAGTGAAACCAGACCCGGGGCACTTGGCTACCCAGCCCCATCAGGGGGGCTCATTCCTCTTTCAGAAGGCTTCTACCAGCCACTTCCCACCTGTTCCTCTCGCCCCACAG
Seq C2 exon
GGCCACCCACCGCTGGTGAAAATCCTCGCCCAGCTTTTTGGGAAGCTGCTCGGACGAGACCTGGATCCTATGACCAATGTGATGGTGACTGTGGGGGCATACCAGGCCCTTTTCTGCTGCTTCCAGGCTTTCATTGATGAAGGCGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004604:ENSGALT00000007326:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PU(10.6=78.8)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCGTAAAACTGGCTGCCA
R:
TCGCCTTCATCAATGAAAGCCT
Band lengths:
295-918
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]