DreINT0005887 @ danRer10
Intron Retention
Gene
ENSDARG00000100818 | CCBL2 (2 of 5)
Description
cysteine conjugate-beta lyase 2 [Source:HGNC Symbol;Acc:HGNC:33238]
Coordinates
chr6:25116429-25121159:+
Coord C1 exon
chr6:25116429-25116573
Coord A exon
chr6:25116574-25121009
Coord C2 exon
chr6:25121010-25121159
Length
4436 bp
Sequences
Splice sites
5' ss Seq
TTTGTATGT
5' ss Score
2.51
3' ss Seq
AGTTACATTTCTGTTTTCAGGGC
3' ss Score
9.25
Exon sequences
Seq C1 exon
GGTGGCCTTCACATCTCTGGCTGCAGACCCTACCGTTGTCAATCTTGGACGGGGTTACCCAGACATTCCTCCTCCTTTATATGTGAAAGAGGGACTTGCTCAAGCTGCTCTGGTAGACCAGCTGAACCAGTCCACACGCAGCTTT
Seq A exon
GTATGTTCTGTCTACACTTCCTAACCATCTTGTATTTATAATATACTAGTAAAGCTTTCACTTGTGTCTATTTGCAAGCTACTAGTACCTATTGTTTTCAGATACTTGTATCATTTCCATTAGGCATTAGTTACTTATTTATTAACTTGTGTTTTCTATAAATTTTAGTGCTTTATCCTAAGATACTAAAATTGTTTCTGAAAGATACTAGAACTTCTTTATTAGATATTAGTATTTATTCATTATAAGCTATTTTTATCAGATATTAGTTATGAAAATGACAATAATATTTATTCATTAGATTGTAATATTTATTAAATATTAGAATTAACATGTCCAACTTTATTATCATTAATGTTAACGAACAAGACAAATAATTACTGTAATAAATAAATTGTTCATTGTTTGAATTGTAAAATAATGAACCATTATTTTAAAGTGTTACCAGATTATAGATAATAATAGATAATAGATCTCTCTATTTCTCTATTATCTAGAAAATAAGAACTAGTATCTCATTCATAAGTCCTATTAAACTTTACAAAAGGCACAATTTAGCTAAAGAAACACTAGTAACTAAAGAATAAACATTAATTACCCTTTATTATGTATTGCCTGGTATTTATTTAATTTAGGTAAGCATATGTATAGTACTTAAATGCATAATATATCATTATATAAAAATAAGAATTAGTAGCTTAAAAGTCAATACTAGTTCCCTAGCGGGAGGGGAACTTTAATGCTATGTGGACAACTTCCACTATGGAGATTTTGTCAAAAGCCAATAATCTAAAAGAGTAATAATGAAATGCCAATGAATTGGCGGCGTCAGTGTACACAGCTGGCAGCAACTACAATCATTTATGTATAAAGATGCTAGCCATGCATCGCAGAGACACCATTTCCCTCACGCTACTGACAAAGTTGGTTCCTCCAAACTTTCTTCGAGAGAAAGGGAGAGAGTGAGAGTGAACGGGAAAGCTGCCGGCATTTTCTCCCCGGTGCAGATTGTGTGACAAGCAGTGGCAGATGGTCAAGCTGGGTCTATTCTCCCTTGCTTGGGCATTCACTGGTCCGGTTCTACTAGAGCGGTCAAAAACTAAACAAGTTTTCTAAAAGAGCAATACGATCATGCAGCATGTCTTTTTAAAGACGTTGTTCCGACTTTGCGTTTTTGGATGCCATGGTTTCCTGTCCAGGGATGATGGGCATGAGCACTGTGTTGCATGTCTGGGGATTCAGCATGTTAATGCGGTGCTCGCGGGCAGCGCATGCCATCACTCTGAGGGTGTCTGTTGTGCAGCTAAGATCACGACTTACTCTTGTAAATGGGGCGAACCACTCCATCCAAGCTTTGAGAGAAGTGTTCCATTCTCAGGGATGATTGCCCTCTCACTCGATGACACAGAGGACCCGCATCTTCCCTCAGGGGTGGTAAGCGAGGCTCTGGATATGGAATCAGATATGATGGTCACGCTGCTGCTTTGGCAGTGAGGCTGGAGATGGCTAGTTCCCCAATTCCGCTGCCAAACTTATTAGACGGGTGTGACATAGAGAATAACAAGGCCAAACCCTCTAAGTCTCCCTTCCCCCTTTTCCCGGAGTTGCGCAGTAATTTGACGCAGTGCTGAGAGCACCTTTTTCTGCTCGTCATCCAAAGCTTGTAGGTTGTTTGCAACCCTTGAGGTCAGAGCCTACACTGCTGCAGGCCAGGCTGCTTCTGTTTTGATTGCTTTAGCTGGAGTAGGCGAGGAAGGTTCCGACCCAGGCTTAATTTACGCACCGCAATCGACTTTGCACTAAAACCACCAGTTCGGCTGCAAGTGCCCTGGGAAGGACAATGATCACACTAGTGGTCCAGAAACACCACCTCTGGCTAATACCTGATAGATTTGCATGATGCTAACAAAGTTCACTTTCTTAACACACGCATATCCCAGGATGGCCTGTTCAGGGACACCGGGGGGGAGTTCACCCAGAAATTCACCACTGTGAAAGATCTGTCAAATGCGATCGGCGGGCTTTATAAACCGCTCTTCCCATTGAACTATCCACTTTGGCTGCTCCTCGCCAAGGGCACTCGTCTGTGGCCTCAAAATTAGCTCTACTGTCCTGTCTATTCCACAGTTTAAGTGGCAGCATCGAGCATCCAATAGACGATCACCTTCCCCCGCCTCAGGGCACCGCTAAATCTGGTACTCAGAATTGGTGCTCTTGGCTACAGACTCTGAGAGTGCCATAGGATTGGCTCCTTTTTCTCTAGCACTCCCAGCCATTCTGTGGGCTTTTGGGACGAAGTTAAGATTAACCTCTTATCTTTCGATCCTCTATAGGGATGCACGCCTCCCGGCGGAGCATGCCCTATTGTCCCTTCGGTGAGCGGGCATCTGGATACTTAATTATCTCGATGACTGGCTTTTTTTTAGCTCACCTGCAGGATCAACTGATTATGCATAGGGACAGGGTGCTCAGGGTTGGAGTTGAACTGGAGATGCCCATGGCATGCGGGCACACACCGCGTGACTGTTACTCCAATGTGTCGCCTCGTCCTAGGTCTCTTGACCGACACTGCATTTCTACAGGCCTGTGTACCTCTAGAAAAAGTATCAAGGTATGTGGTCGTTCCAACGAATGCTTCCAGTACGCGCTGGTGGGCCATGTGTTGGTAGGTGCTGGACTGTAACTTGGAAGGAACCCAGTTGCATTGGCATATTAATTGTCTAGAGTTGTTGGCAGCGTATCTCAGCCATTTTTTTATTGGTGCTAAAGGCCAAACAGGTGCTGGTCAGGATGGACAGCACAGCAACGATATTATATATCAACCGCATGGGGGTATCCACTCTCGCCACATATCTCAGCTCTTTCGCCGTCTGCTCCTCTGGAGTCATACAAGGTGGAAATGCCCCAAGCTGTCCAGCTGTTATGGGTGCATGCTGGCTAACACAGCTGGCCCCTGGGGCATGCATAAATACCTATTTCTTCAGTTAGCCTATACTCGCACAGTCAGGGAGGGTAAGGAGAAGGTCGGTTTATTGCATCTCTCTGGCTCAAAGGGTCTTGTATTTTAGCTCTCTCCTCGTGATGGCTCCTCCCTGGCATATCCTTTGGAAGAAGCACCTTCTTATCTGGGACAGGCACCATCTGGCACCCGTGCCCAGATCTCTGGAACCTCATGTGTGGTCCATCGATAGATCGTAGAGGACTTAGGTGACCTACCGGTTTAGTAGTTAACACCAACACTCAGGCTAAAGCACCCTCTACGAGGCATGCCTATGCCCTAAAGTGGAGGCTATTTGCTGTGTGGTGTATTTTTCCAGAGAAGGACCCCACACAAGCCAGAGCAGTGTGATGCTATCCTTTTTCAGCTGGCTGTAGCTAGGGCTGTCCCCTCCACACTGAGGGGTTGGCGTTACGATCATCCCCACTCTGAGGACTGGGTGGTTTGATGACGCACTGGGAAAGCATCGCCTCATCATCCAGTTCCCAGTGGCACGAGACACTGGATAATTAAATCCATCCTGTCCCCCTCTCATACCCACTTGGAGCTTTCTCCTAGGAAAGGTCTGACTGATCCACTAAGTATCTTTAAGATTTTTGTCCAGGTATACACCTCTGCTGGTTGCGTTGGCATTTTCAGGAGGGTTGAGTATCTGGAGGCATTTTCGATCAGTGAAGTATGTCAGCTATTGCAGCCGGCCTACTCTCAGGTTTCCTAAGACCCCGGCCCACATAGGTGCCCGATGTTACTGCAGCAATTTCTGTTTTAGACTACACAGTGAACCTGCAAGCGCTGGCCAAGAAGGAGGCAGACCCAGAACCTTTCTACTGTGTGCTGGATAACGCCAATGAATGATGAAATTTGGTACGGAGTTAAAACACGTTTGCTGTGCCTTTCTCTCTAACAAAGAGTTGCATGCTCTTTTCTTACTCAGTTAGGGTGCCAATTCGGCGAGCCCTACAGAGCTCCTCCGAGGCCCCCAGCATCTGACTCAGCAGAGGAGTCAGGTGCCTGGCCCATAATGTTGTTGGCATAACTTTGTCAGCCCGTATTCTGGGTATAGGTGCCTGCTATGTGCAATCTACACTGGCGATCCCATATGCTTCACCCTCTTCGGGCAGGCCCGTGTCTTCACTCCCTGCTTACCTTCCCTCAGCAGCGTCCCCCCTATCGGGACTGCACACTTTCCCAAAGCTAAAAAAGGCGTCTTTGCGATGCACAGCTGCCACCAATTTATTGGCATTTCATTGGCCTGTTTTATTACTCTTTCAGAAGATTGACTTCTGATGAAATCCTTAAAGTGGAAGTTCCACATAGCATTTCTGTTCAAACCCTCGGGGAACAAGAGTTACATAGTAACATTTTTGTCATGGTTTATAATAAAAACATATTGCCTTTTGTATTGTTTATTGACAAATAGTTACATTTCTGTTTTCAG
Seq C2 exon
GGCCACCCTACACTGGTTAAAGCTCTATCAAAAGTGTATGGAAAAGTCTGTGATCGTCAGCTTGACCCTTTTAAGGAAATCTTGGTCACAGTAGGTGCATATGGTTCTTTGTTCAGCACTATGCAGGCTCTGGTTGAGGAAGGAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100818:ENSDART00000163440:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PU(14.7=77.6)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]