RnoINT0081180 @ rn6
Intron Retention
Gene
ENSRNOG00000016097 | Kyat1
Description
kynurenine aminotransferase 1 [Source:RGD Symbol;Acc:1306912]
Coordinates
chr3:8755406-8758119:-
Coord C1 exon
chr3:8757972-8758119
Coord A exon
chr3:8755556-8757971
Coord C2 exon
chr3:8755406-8755555
Length
2416 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
CATGCTGTCCTGGCTGGCAGGGT
3' ss Score
7.76
Exon sequences
Seq C1 exon
GGTGGAGTTTGGCAAACTGACCAAGGAGTATGACGTCGTGAACTTGGGTCAGGGCTTCCCTGACTTCTCGCCTCCGGACTTTGCAACGCAAGCTTTTCAGCAGGCTACCAGTGGGAACTTCATGCTCAACCAGTACACCAGGGCATTT
Seq A exon
GTGAGTTTCCTGCCTCTCCTGAAGGTCCTGGGGAACAGGCATTGATGTAGCCCAAGTGTCAAGGCTCATGGGACAGAGTACAGATTAGCATCCCTCAGTTACTGAGAGTCCCCTGTACTGTACCTCAGGTCCCAGGGCAGAATGCACATCAGGACCCTGCATGATCAAAGCATCTGACCAGGGCTGTGAGAAAGGAGGAGGTGGCACATGGTAGGGGGAGCTTCCAGGAGGTGGTACCTCAAACAACCCAGGAAAGACAGCCTGCTGTTTGCAACAGACTAAGTCCCAGAAGCTCTGTGAGGAACCACACAATAGGCAGTTGCCAACACTGGACTAAAACAGTGCTTTTTGTTTTGTTTTGTTTTTAACACAGGGTTTCTGTGTGTGACCCTGGCTGTCCTGGTACTCTCTCTCTAGACCAGGCTGGCCTCTAATTCACATACATCCACCCGCCACTGTCTCCCAAGTGCCAGGATTAGAGGAATGAGCCACCGGTGCTGGCTAGAACAGTGCTTAAATTTAAATCTTAAATTTGCAATCTCAGCATCACCTGGAGGGAATTTCCCAACATTCTTTGTGATGACGCTTACTATTCTTTGCTTGAATGGACTCATCCTGTATGTAATATAATGTAAGTTGATGGCGTCCTTAAGGAATATATCCTCCCAGTCAAAGCCTCAGCCCTTTTACCCTTTAAAACCCGCAGCCCAGGGCCTGGGGGTGCCAAGCACTCGTTGTGCCGATGAGCTGTGTGCAGCTCCTCTCTCCCCTTTTAGCACCTCATGCATCGGTGTGGTGTTGAAACCATTCCCTCCTTTCTCTGCCTCCCTGTGTGCCCAGCACTCCCTCTCAAACTCACCAGTGGCAATTGGATCTCTGTGAGTTTGAGGTCACCCGGGTATACATAGGCAGTTCCAGGCCAGCCAGAGCCACATACTGAGACAGCCCCCTCCCCAAATAATGAAGGCTGCATACATTTAAATGTGGTAGACAAGTCTTGGTAAACTGTCCATGACTTAGGCTTACTCCTTGACATCCTACCAAGAGGCTGATCTCAGAGAAACGCAGAAGATTCTTTGCTTAAGCCAAAAGATAAAAGGCACCTTCATCTTTGATGGCGGAGCATTCGTGTGTTATGCCTAAGCCCCGTGTCTAATTTGCAGAGGTGGGGGCAGGCAGCCTGAGGAAGCATGAGCAGTCAGTCCTTCCTGTCACCTCAGTGTCTCCGGGCTGCTGTGCTCTGGCTACTTCCTTTTGATTTGGACACAGTCCTCTTTCAGTGTGCACCACTAAGTTCAACAGCCCCCTGACTCTACTTATGCTTCCACTGTGAGGTGCATTCTTAACTCGAGGTTTTGGGAGGGTGCGTGAAGGAGGAGGCAGCTCTGTCCCTCACAGATTGCGTTATTTGTGTCTCTGTGTGTGGACTTTGTTTCCATCTTCCTGTCTTCTGTCTGGCACGCTAGGGCACCGCTTAAGTTCTAGCCGTTCATTTAGTCACTTGGCTGTTGGGCCTGTCTTCTCCCCTCTCTCGGTGGCTCCTGACTGCTCATGCAGTGAGCCCACCCCTCTCGTGCTGCCACCTCCAGGACTTACCCCGCGAGGGCTATTTCCTCAAACTCTGCCCTGTGGGTGCCAAGTGTTCAGTCAGCATGTGTCAGTTCAGGAGAGGGAGGGGCCAGCCAAACAGCTCAGACACTTGAAGAATGACATGAACTCGGTCCCTAGATGCCACATGGTAGGCAGACAGAGCCACTCTTTAATGTTGTCCTCTGACCACCGTATGTGTAATATTGTACTTATGTGTGCACATGCTTGCACACACACACACACACACACACACACACACACACACACACACGATAAATAATTTTTCCTTTGAGGTAGGGTCTCTCTATGAAGTCCTTACTCTCCGGAAACTCTCTCTGTAGACCAGGCTAGCCTCAAATTCAGAGATCCGCCTGCCTCTGCCTCCTGAGCGCAGGATTTAAAGGTGTTCTCCACCCTGCCCCGCCAAATAAATGTTTTGTTGTTCGTAAGTTGTTTAGAAAGGAGAAAATAAACCTTCCTATTCTGCACCTCATTCTCTAGGACCTTGGGCAAGACAGTTCCTCAGGCATTCTATTTTGTACTGCACCCCAACAGTAATCTGTGGTTCCAGGGCTGGGGTGAGCACAAATGTGCCCTTTAGGCACTCAGGGAAGTGTGGGTTCCTGTTGCCCTGCTGTGCTGGAGGAGGAGACAGACACAATGTCAGCTTCTCCACACACACCAGCTCTGGGAGTGACTCCATGGCCCAGGCTGCTAGAGGAGACTGAGCCCAGGAAAGCTGACTTTGCTGGAAAGTGCCCGGGTGCAGGTGAGCTGAGAGGCTAGGCCGATCCTGGGTGCCTGACCATGCTGTCCTGGCTGGCAG
Seq C2 exon
GGTTACCCACCACTGACAAACGTCCTGGCAAGTTTCTTTGGCAAGCTGCTGGGACAGGAGATGGACCCACTCACGAATGTGCTGGTGACAGTGGGTGCCTATGGGGCCTTGTTCACAGCCTTTCAGGCCCTGGTGGATGAAGGAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016097:ENSRNOT00000021865:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PU(10.1=78.0)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]