MmuEX0037686 @ mm9
Exon Skipping
Gene
ENSMUSG00000050737 | Ptges
Description
prostaglandin E synthase [Source:MGI Symbol;Acc:MGI:1927593]
Coordinates
chr2:30744991-30785383:-
Coord C1 exon
chr2:30785282-30785383
Coord A exon
chr2:30758610-30758806
Coord C2 exon
chr2:30744991-30748346
Length
197 bp
Sequences
Splice sites
3' ss Seq
CGCCTCCTCCTCTCCATAAGCCG
3' ss Score
1.51
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GCGAAAAGCCCGAAGCCCCCTTGGATATCACGCCGCCAAGGCCTCCAGTGTGACGTGGTGACGTCATCACGGATGAGCTCAGCAGAGACACCTGAGGACAAG
Seq A exon
CCGCCTGTGGGACAGTCTCACTCTCAGTCCCGGTGTCCCCGAGTTGAAGTCCAGGCCGGCTAGCCGAGATGCCTTCCCCGGGCCTGGTGATGGAGAGCGGCCAGGTGCTCCCGGCCTTTCTGCTCTGCAGCACACTGCTGGTCATCAAGATGTACGCGGTGGCTGTCATCACAGGCCAGATGAGGCTGCGGAAGAAG
Seq C2 exon
AGCCCACCGCAACGACATGGAGACAATCTATCCTTTCCTCTTCCTCGGCTTCGTGTACTCATTCCTGGGACCCAACCCTCTGATCGCCTGGATACATTTCCTCGTTGTCCTCACAGGCCGTGTGGTACACACCGTGGCCTACCTGGGCAAGCTGAACCCACGCCTTCGCTCCGGGGCCTATGTCCTGGCCCAGTTCTCCTGTTTCTCCATGGCCCTGCAGATCCTCTGGGAGGTGGCCCACCATCTGTGACCAGCAGCTGAAGCCTCCTCAGCTACCACAGTGGGGACAGAGCCATGAAGGCTGAACTTGCGGACTTGGTGTCTCTTCTAGAATAGGGACGGGGTCTGGTCCTGGGGTCCTGGGTAACCTGGGCGAGTGGATCTCAGGGCCCAATGTGCACATGTGTGTTTCTTAGCCTTTTGGGATGCTAGATGAAGTCCCATTTGGAGCCACTTACAGATGAGCTGTCAAGATTTGAGAGGACATCCTTCACCTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050737_MULTIEX1-1/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0112413=MAPEG=PU(19.8=60.5)
C2:
PF0112413=MAPEG=PD(58.0=90.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGCTCAGCAGAGACACCT
R:
GGGCCATGGAGAAACAGGAGA
Band lengths:
245-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: