GgaEX6015163 @ galGal3
Exon Skipping
Gene
ENSGALG00000004226 | E2IPN6_CHICK
Description
NA
Coordinates
chr17:6234039-6236064:-
Coord C1 exon
chr17:6236001-6236064
Coord A exon
chr17:6235288-6235425
Coord C2 exon
chr17:6234039-6234121
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTTCCTGTCCCCCTCTGCAGGGC
3' ss Score
12.5
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CACCGGGCTCCCCTGATTCACGTTCTGGGAGAAAAGCAAGCGGAGCTGCCCCAGGGACGGGTTG
Seq A exon
GGCCAAGGCAGGAGCTCCGCATCCTCCACAATGATGGGGAACACCGTGTTCCTGTCATTCGCCTTCTACAGCACGATCCTGATCCTAAAGATGTATGTCGTTGCCATCATCACGGGACAAGTGAGGCTCAGGAAGAAG
Seq C2 exon
GCATTTGCTAACCCAGAGGATGCGCTGCGCAATGGAGGGCTGCAGTACTACCGTGAGGACCCCGATGTGGAGCGCTGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004226-'0-2,'0-0,4-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0112413=MAPEG=PU(19.8=60.5)
C2:
PF0112413=MAPEG=FE(20.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGGGCTCCCCTGATTC
R:
CGCTCCACATCGGGGTCC
Band lengths:
138-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]