Special

MmuALTA0005055-1/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000026883 | Dab2ip
Description
disabled homolog 2 (Drosophila) interacting protein [Source:MGI Symbol;Acc:MGI:1916851]
Coordinates
chr2:35574280-35576261:+
Coord C1 exon
chr2:35574280-35574458
Coord A exon
NA
Coord C2 exon
chr2:35575439-35576261
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
GACTTGTTTTTTGTCACAAGGTC
3' ss Score
6.62
Exon sequences
Seq C1 exon
AGCGTTGTGTCGAAGCTGGGACCTCTGCCTCGTATCCTGAGGGATGTCCACACAGCACTGAGCACTCCTGGCAGTGGGCAGCTCCCTGGCACCAATGACCTGGCCTCCACCCCGGGCTCCGGCAGCAGCAGCGTCTCTGCTGGGCTTCAGAAGATGGTGATTGAAAATGACCTCTCTGG
Seq A exon
NA
Seq C2 exon
GTCCTCCGGGGTCCAGCCTTCACCTGCCCGCAGCTCAAGCTACTCAGAAGCCAATGAACCTGACCTGCAGATGGCCAATGGCAGCAAGAGCCTGTCCATGGTGGACCTCCAGGACGCCCGCACGCTGGATGGGGAGGCAGGTTCCCCAGTGGGCCCAGACGCCCTACCTGCTGACGGGCAGGTGCCTGCGACTCAGCTGCTGGCTGGGTGGCCAGCCAGGGCAGCCCCAGTGAGCCTGGCAGGATTGGCCACAGTGCGGCGGGCAGTGCCAACACCAACCACACCAGGCACCTCCGAGGGTGCACCAGGACGGCCCCAGTTGTTGGCCCCACTTTCCTTCCAGAATCCTGTGTACCAGATGGCGGCCGGCCTGCCACTGTCACCCCGTGGCCTTGGTGACTCAGGCTCTGAAGGCCACAGCTCCCTGAGCTCTCACAGCAACAGTGAAGAGCTGGCAGCCGCTGCCAAACTAGGAAGTTTCAGCACTGCTGCAGAGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026883-26-26,26-25-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.492 A=NA C2=0.916
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF120043=DUF3498=PU(86.8=76.7),PF120043=DUF3498=PU(0.1=0.0)

							
A:
NA

							
C2:
PF120043=DUF3498=PD(9.4=1.8),PF120043=DUF3498=FE(98.6=100),PF120043=DUF3498=PU(2.4=1.1)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000121506





     
                   









    
Main Skipping Isoform:
ENSMUSP00000088532





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000028246, ENSMUSP00000068832, ENSMUSP00000108607, ENSMUSP00000108610, ENSMUSP00000108611, ENSMUSP00000108616, ENSMUSP00000119058, ENSMUSP00000122341
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr9:121772673-121773495 
ALTERNATIVE
HsaALTA1028133-1/2
(DAB2IP)
Human
(hg19)
chr9:124534950-124534951 
Rat
(rn6)
chr3:15049336-15049337 
Cow
(bosTau6)
chr11:92654330-92655167 
ALTERNATIVE
BtaALTA0008656-1/2
(DAB2IP)
Chicken
(galGal4)
chr17:8599472-8599473 
ALTERNATIVE
GgaALTA0000616-1/2
(DAB2IP)
Chicken
(galGal3)
chr17:9305469-9306279 
ALTERNATIVE
GgaALTA0000616-1/2
(DAB2IP)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GCTCCCTGGCACCAATGAC

				
R: 
GCAGGTCAGGTTCATTGGCTT

				
Band lengths: 
167-233

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"