GgaALTA0000616-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000001419 | DAB2IP
Description
NA
Coordinates
chr17:9303756-9306279:+
Coord C1 exon
chr17:9303756-9303934
Coord A exon
NA
Coord C2 exon
chr17:9305469-9306279
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
GACTTGTTTTTTGTCACAAGGTC
3' ss Score
6.62
Exon sequences
Seq C1 exon
AGCACTGCAACAAAACTTGGCCCTCTGCCGCGGATCCTGAGGGACGTCAACTCGGCGCTCAGCAACCCGGCCTGCGTGCAGGTCTCGGTCACAGCCGACCACACTGCATCCACTCCCAGTGCTGGCAACAGCATCTCTGCGGGGCTGCAGAAAATGGTGATAGAGAATGACCTACCTGG
Seq A exon
NA
Seq C2 exon
GTCTGCCGGGGCCCAGCCCTCGCCTGCTCGGAGCTCCAGTTACTCAGAGGCCAATGAGCCCGACGTGCAGATGTCAAATGGCAGCAAGAGTTTGTCCATGGTGGACTTGCAGGACAATCGGCTCTTGGACAGCGGGGCCAACGCGCCCGGCGCTGCCGACTCCCTCAATGACAGTCAGTCGTCCCTCGGGCAGTTGCAGGGTGTGTGGACCGCTCGGACTCAGCAGAACAGCGTGACGGGGATGGCCACGGTGCGCCGCGTGGGTCAGACGCCCACCACGCCGAGCGGTGAGAGCGCACCCGGCCGGCCCCAGCTGCTGGCCCCGCTCTCCTTCCAGAACCCCGTGTACCAAATGGCCGCCGGGCTGCCGCTCTCACCCCGCGGCCTGGGCGACTCCGGCTCCGAGTGCCACAGCTCGCTCAGCTCCCACAGCAACAGCGAGGAGCTGACGGCCAACAAACACGGCTTCGCCGGCCCCGCCGCCAGCGAGGACTTCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001419-18-18,18-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.956
Domain overlap (PFAM):
C1:
PF120043=DUF3498=PU(9.2=78.3)
A:
NA
C2:
PF120043=DUF3498=FE(57.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCTGCAGAAAATGGTGAT
R:
GTCCAAGAGCCGATTGTCCTG
Band lengths:
169-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]