MmuEX0001813 @ mm9
Exon Skipping
Gene
ENSMUSG00000075302 | 4933404M02Rik
Description
RIKEN cDNA 4933404M02 gene [Source:MGI Symbol;Acc:MGI:1913998]
Coordinates
chr2:70350817-70360564:+
Coord C1 exon
chr2:70350817-70350873
Coord A exon
chr2:70359130-70359165
Coord C2 exon
chr2:70360537-70360564
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTTTGTTGTTCACAGTCT
3' ss Score
9.58
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GACAAGAAGTCCCAGCATTCCCCTGGAGAACACGTTGAAGGAAACCAGTTGCTTAAG
Seq A exon
TCTTAGCCCTGAATTTTGTATTCCTGAAATTCCCAG
Seq C2 exon
CAACTACCTGGACAAGACTGATGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075302_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=0.000 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAAGTCCCAGCATTCCCC
R:
GCACATCAGTCTTGTCCAGGT
Band lengths:
81-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: