RnoEX0033002 @ rn6

Exon Skipping

Gene

ENSRNOG00000056087 | Erich2

Description

glutamate-rich 2 [Source:RGD Symbol;Acc:1563852]

Coordinates

chr3:56803546-56815312:+

Coord C1 exon

chr3:56803546-56803591

Coord A exon

chr3:56814139-56814174

Coord C2 exon

chr3:56815282-56815312

Length

36 bp

Sequences

Splice sites

3' ss Seq

TTCTGCTTTGTTGTTCACAGTCT

3' ss Score

8.95

5' ss Seq

CAGGTATGT

5' ss Score

9.8

Exon sequences

Seq C1 exon

GTTGGGCCTCTGGAACCCCTCGGCTGTCGAAGCACCCGCAGAGAAG

Seq A exon

TCTTGTCCCTGAGTTTTGTATTCCTGAAATTCCCAG

Seq C2 exon

CAACTACCTAGACAAGACCGAAGTTGTAAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000056087-'2-3,'2-2,4-3

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

  C1=0.969 A=0.154 C2=0.545

Domain overlap (PFAM):

C1:

NO

A:

NO

C2:

NO

Main Inclusion Isoform:

ENSRNOP00000072627

Main Skipping Isoform:

NA

Other Inclusion Isoforms:

NA

Other Skipping Isoforms:

NA

Associated events

Conservation

Human

(hg38)

chr2:170775914-170775953

LOW PSI

HsaEX1001754

(AC007405.6)

Human

(hg19)

chr2:171632424-171632459

Mouse

(mm10)

chr2:70521073-70521108

ALTERNATIVE

MmuEX0001813

(Erich2)

Mouse

(mm9)

chr2:70359130-70359165

ALTERNATIVE

MmuEX0001813

(4933404M02Rik)

Cow

(bosTau6)

chr2:25730786-25730811

Chicken

(galGal4)

No conservation detected

Chicken

(galGal3)

No conservation detected

Zebrafish

(danRer10)

No conservation detected

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

TTGGGCCTCTGGAACCCC

R:

ACAACTTCGGTCTTGTCTAGGT

Band lengths:

72-108

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]