HsaEX1001754 @ hg38
Exon Skipping
Gene
ENSG00000239467 | AC007405.6
Description
NA
Coordinates
chr2:170771113-170777177:+
Coord C1 exon
chr2:170771113-170771187
Coord A exon
chr2:170775914-170775953
Coord C2 exon
chr2:170777147-170777177
Length
40 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTTTAATGTCCACAGTCT
3' ss Score
7.89
5' ss Seq
TAGGTAATA
5' ss Score
6.84
Exon sequences
Seq C1 exon
TCCGCGCGAGCAGCTAGCCGGGCTGGCTCTCGGTGTGTGCCCTTCGGATGGTCTGCTGAAGAGGGCCGCCAGCTG
Seq A exon
TCTTGGCCCTGAATTTTATATTCCAGAAATCCCTCAGTAG
Seq C2 exon
GACTTCTGTAGACAAGACAGATACTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000239467_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTCTCGGTGTGTGC
R:
CTTTACAGTATCTGTCTTGTCTACAG
Band lengths:
84-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains