MmuEX0001812 @ mm9
Exon Skipping
Gene
ENSMUSG00000075302 | 4933404M02Rik
Description
RIKEN cDNA 4933404M02 gene [Source:MGI Symbol;Acc:MGI:1913998]
Coordinates
chr2:70347713-70359165:+
Coord C1 exon
chr2:70347713-70347758
Coord A exon
chr2:70350817-70350873
Coord C2 exon
chr2:70359130-70359165
Length
57 bp
Sequences
Splice sites
3' ss Seq
ATATATGTGTCATGTGCTAGGAC
3' ss Score
6.3
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
GTTGGTCCTGTGGAACCGCACGGCTGTCGAAATACTGCCCGAGAAG
Seq A exon
GACAAGAAGTCCCAGCATTCCCCTGGAGAACACGTTGAAGGAAACCAGTTGCTTAAG
Seq C2 exon
TCTTAGCCCTGAATTTTGTATTCCTGAAATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075302_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.300 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTCCTGTGGAACCGC
R:
ATTTCAGGAATACAAAATTCAGGGCT
Band lengths:
76-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: