MmuEX0001812 @ mm10
Exon Skipping
Gene
ENSMUSG00000075302 | Erich2
Description
glutamate rich 2 [Source:MGI Symbol;Acc:MGI:1913998]
Coordinates
chr2:70509656-70521108:+
Coord C1 exon
chr2:70509656-70509701
Coord A exon
chr2:70512760-70512816
Coord C2 exon
chr2:70521073-70521108
Length
57 bp
Sequences
Splice sites
3' ss Seq
ATATATGTGTCATGTGCTAGGAC
3' ss Score
6.3
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
GTTGGTCCTGTGGAACCGCACGGCTGTCGAAATACTGCCCGAGAAG
Seq A exon
GACAAGAAGTCCCAGCATTCCCCTGGAGAACACGTTGAAGGAAACCAGTTGCTTAAG
Seq C2 exon
TCTTAGCCCTGAATTTTGTATTCCTGAAATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075302_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTCCTGTGGAACCGC
R:
ATTTCAGGAATACAAAATTCAGGGCT
Band lengths:
76-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types