RnoEX0033001 @ rn6
Exon Skipping
Gene
ENSRNOG00000056087 | Erich2
Description
glutamate-rich 2 [Source:RGD Symbol;Acc:1563852]
Coordinates
chr3:56803546-56814174:+
Coord C1 exon
chr3:56803546-56803591
Coord A exon
chr3:56806808-56806864
Coord C2 exon
chr3:56814139-56814174
Length
57 bp
Sequences
Splice sites
3' ss Seq
GCCATCATATGTCATGCTAGGAC
3' ss Score
5.81
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
Exon sequences
Seq C1 exon
GTTGGGCCTCTGGAACCCCTCGGCTGTCGAAGCACCCGCAGAGAAG
Seq A exon
GACAAGAAGTCCCAGTATTCCCCTAGAGGCCACGTTGAAGGAAACCAGTTGCTTAAG
Seq C2 exon
TCTTGTCCCTGAGTTTTGTATTCCTGAAATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056087-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.969 A=0.500 C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000077551fB4973
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGGCCTCTGGAACCCC
R:
ATTTCAGGAATACAAAACTCAGGGAC
Band lengths:
76-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]