MmuINT0106850 @ mm9
Intron Retention
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25110384-25110934:-
Coord C1 exon
chr2:25110737-25110934
Coord A exon
chr2:25110462-25110736
Coord C2 exon
chr2:25110384-25110461
Length
275 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
ACTTGTGTCTTGTCCTCGAGGCG
3' ss Score
4.3
Exon sequences
Seq C1 exon
TTCCTGTTGACAGCGGAAGGGGGAAGTTGGTGAGGTGTGCGGTTCTGGCCGGCGTGTGCAGTAATGCAGGTTCCACAGCTCCTGGTGCTTTTCGGCAGCCAGACTGGTACAGCCCAGGACGAGGCGGAGAGGCTGGGCCGTGAGGCCCGGCGCCGGCGGCTAGGTTGCCGCGTGCAGGCTTTGGACTCTTACTCCGTG
Seq A exon
GTGAGGCTCGGGCGCTACGGCGGAGACCCTCCACCGGACTTCGCGCCCTCGGATGGAGGACGTTTGAGTGAGGCCCTTTGGGCCCAAGCGGATTCAGGGGAAAGGGAGGCACTAGGTTGAGGCCTGAGAAAGTAAAGCCTGGTAGCCAGTGGGAATAAGTGTCCAAACACTTTTACTCTGTTCCCCTAGGTGAAGGTGGTGGTGGGATGCGGTGCAGGGAGGGCACTGATCAAGGCTGCCAGAGACCTTACATCTACTTGTGTCTTGTCCTCGAG
Seq C2 exon
GCGAATCTCATTAGGGAGCCCCTGGTGATATTTGTTTGTGCGACCACAGGCCAAGGAGACCCTCCTGACAACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471-Ndor1:NM_001082476:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.112 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=PU(31.6=82.2)
A:
NA
C2:
PF0025820=Flavodoxin_1=PU(27.2=57.1)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGTTGACAGCGGAAGGG
R:
CTTCATGTTGTCAGGAGGGTCT
Band lengths:
276-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: