MmuINT0106850 @ mm10
Intron Retention
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25254864-25255409:-
Coord C1 exon
chr2:25255217-25255409
Coord A exon
chr2:25254942-25255216
Coord C2 exon
chr2:25254864-25254941
Length
275 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
ACTTGTGTCTTGTCCTCGAGGCG
3' ss Score
4.3
Exon sequences
Seq C1 exon
GTTGACAGCGGAAGGGGGAAGTTGGTGAGGTGTGCGGTTCTGGCCGGCGTGTGCAGTAATGCAGGTTCCACAGCTCCTGGTGCTTTTCGGCAGCCAGACTGGTACAGCCCAGGACGAGGCGGAGAGGCTGGGCCGTGAGGCCCGGCGCCGGCGGCTAGGTTGCCGCGTGCAGGCTTTGGACTCTTACTCCGTG
Seq A exon
GTGAGGCTCGGGCGCTACGGCGGAGACCCTCCACCGGACTTCGCGCCCTCGGATGGAGGACGTTTGAGTGAGGCCCTTTGGGCCCAAGCGGATTCAGGGGAAAGGGAGGCACTAGGTTGAGGCCTGAGAAAGTAAAGCCTGGTAGCCAGTGGGAATAAGTGTCCAAACACTTTTACTCTGTTCCCCTAGGTGAAGGTGGTGGTGGGATGCGGTGCAGGGAGGGCACTGATCAAGGCTGCCAGAGACCTTACATCTACTTGTGTCTTGTCCTCGAG
Seq C2 exon
GCGAATCTCATTAGGGAGCCCCTGGTGATATTTGTTTGTGCGACCACAGGCCAAGGAGACCCTCCTGACAACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471:ENSMUST00000114349:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.112 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=PU(31.6=82.2)
A:
NA
C2:
PF0025820=Flavodoxin_1=PU(27.9=52.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACAGCGGAAGGGGGAAG
R:
TCATGTTGTCAGGAGGGTCTC
Band lengths:
268-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types