DreINT0103033 @ danRer10
Intron Retention
Gene
ENSDARG00000007429 | ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1555]
Coordinates
chr5:31890435-31891547:+
Coord C1 exon
chr5:31890435-31890576
Coord A exon
chr5:31890577-31891469
Coord C2 exon
chr5:31891470-31891547
Length
893 bp
Sequences
Splice sites
5' ss Seq
GTGGTCAGT
5' ss Score
4.85
3' ss Seq
TGTATATGTTTCCTCATCAGGCT
3' ss Score
7.73
Exon sequences
Seq C1 exon
TGAGAGAATGAGCGGACACACTGTACTGGTACTGTACGGCAGTCAGACGGGAACAGCGCAGGACACCGCGGAGAGGATCGGCCGACAGGCGCAGAGGAGGAGGCTGAGGGTCAAGGCGGAGGCCCTGGACACTTACAATGTG
Seq A exon
GTCAGTGCCAGTTGTCCTTATACTCTACAACTGAGGTAAAGTAGACTTTATATTTGAACATTCAGACTTTCTCCTTAATTTCATTTCACAAAAGTATTCTTCGCTAATTATATAGGAAATCATATCAGCACCGCAGAGAAAGACTATCAAAGTACAACATTGTTCACAGCCAGTTTAATAGTGCTGATCTTGTTTTCAAGCCCTACTTACATGAGATTTTAGACCGAATATTAAAAGTAGTTTGGTAAACAATATAGAGACGATATATAGAAGTATTCTTTGCAAGTTATAAATATGAAAATCATATTAGCAGCCAATGATTATCAAAGCACACCATTATTTACTGTCAATTAAATTACGCTAAAGTTGTTTTAAGTGCTACTTGCATGACATTTCAGACCAAATTTTCAAAGTAACGTGGTAAACAATATAAGGTCTGGGCATGGGCCGGTATAAGACTCTGACAGTATGAAAACCAGTTTTTCAGTACTGTGATTACTGCTCTAAAATATTTTCTTTTTAAATGTCTGGGGGAAAAACAAAAATAATAATGAATTATAATGATTAAAATGAATCTTTGACTTCTGCTGCCTTCATTCGTTTTAAATACACAGATTTCATGACAATTTAAAACAGCATCTATGGATATCTTTTCTGCAGGAGATACTGTTGTTCAAAAAAAAATAAAAAACATACCTTTGTAACGGTAATACAGAAATTTTGGGTGGTTTTAAAACATTTTCCATACTGCGTTATACCTTGAAAATGGTTATCATCACATGTCTAATAAGGACCCCATCACAAGTTGTCACTAAACGAATATAAAAGCAACTTTACCTCAATCACTATCATTTATAAGACAACTTTGCATGATGTATATGTTTCCTCATCAG
Seq C2 exon
GCTAACCTGATTTCCGAGTCTCTGGTGGTGTTTGTCTGTGCCACCACAGGACAGGGGGACCCTCCAGACAATATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007429:ENSDART00000033545:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=PU(26.8=82.2)
A:
NA
C2:
PF0025820=Flavodoxin_1=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGAATGAGCGGACACAC
R:
ATATTGTCTGGAGGGTCCCCC
Band lengths:
216-1109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]