RnoINT0099537 @ rn6
Intron Retention
Gene
ENSRNOG00000010616 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:RGD Symbol;Acc:1308479]
Coordinates
chr3:2474369-2474913:-
Coord C1 exon
chr3:2474720-2474913
Coord A exon
chr3:2474447-2474719
Coord C2 exon
chr3:2474369-2474446
Length
273 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
ACCTGTGTCTTGTCCTTGAGGCG
3' ss Score
2.56
Exon sequences
Seq C1 exon
GGGAAGTTAGTGGGTGTGAGGTTCTGGTCGGGCTGCGCGGTCTGTCCGGCGTGTGCGGGATGCAGGTTCCACAGCTTCTGGTGCTTTTCGGTAGCCAGACTGGCACAGCTCAGGACGAGGCGGAGAGGCTGGGCCGCGAGGCCCGGCGCCGGCGGCTAGGTTGCCGCGTGCAAGCTTTGGACTCTTACTCCGTG
Seq A exon
GTGAGGCTCGGGCGCTACGGCGGAGACCTTCCACCGGACTTCCCGTCCTCGGACGGAGGACGTTTGAATGCGGCCCTTTGGGCCCAAGCGAATTTAGGGAAAAGGGAGGCACGAGGCTGAGGCCCGAGAAAGAGAAACCCCGATAGCCACTGGGAATAATTGTCCAAACACTTTTACTCTGTTACCCTAGGTGAAGGTGGTGGGATGCGGTTCAGGGAGGGCACTGATCAGGGCCGCCAGAGACCTTACACCTACCTGTGTCTTGTCCTTGAG
Seq C2 exon
GCGAATCTCATTAGGGAGCCCCTGGTGATATTTGTTTGTGCGACTACAGGCCAAGGAGACCCTCCTGACAACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010616:ENSRNOT00000014445:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=PU(26.8=82.2)
A:
NA
C2:
PF0025820=Flavodoxin_1=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGTTAGTGGGTGTGAGG
R:
TCATGTTGTCAGGAGGGTCTC
Band lengths:
270-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]