MmuALTA0011840-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25110384-25110898:-
Coord C1 exon
chr2:25110737-25110898
Coord A exon
NA
Coord C2 exon
chr2:25110384-25110461
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
ACTTGTGTCTTGTCCTCGAGGCG
3' ss Score
4.3
Exon sequences
Seq C1 exon
GTGCGGTTCTGGCCGGCGTGTGCAGTAATGCAGGTTCCACAGCTCCTGGTGCTTTTCGGCAGCCAGACTGGTACAGCCCAGGACGAGGCGGAGAGGCTGGGCCGTGAGGCCCGGCGCCGGCGGCTAGGTTGCCGCGTGCAGGCTTTGGACTCTTACTCCGTG
Seq A exon
NA
Seq C2 exon
GCGAATCTCATTAGGGAGCCCCTGGTGATATTTGTTTGTGCGACCACAGGCCAAGGAGACCCTCCTGACAACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471-1-10,1-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.112 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=PU(31.6=82.2)
A:
NA
C2:
PF0025820=Flavodoxin_1=FE(21.4=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGCAGGTTCCACAGCTCC
R:
CAAATATCACCAGGGGCTCCC
Band lengths:
171-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: