HsaALTA1052488-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000188566 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:HGNC:29838]
Coordinates
chr9:137205685-137206309:+
Coord C1 exon
chr9:137205685-137205912
Coord A exon
chr9:137206232-137206280
Coord C2 exon
chr9:137206281-137206309
Length
49 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
GTGTGTGTCTTTTTGTTGAGGTG
3' ss Score
3.48
Exon sequences
Seq C1 exon
CGGAAGGCGGAAGGCGGAGCGGTCCCTGCAACCCGGCCGGCGGGAACTGCCTTCTAGTTTTTAGTCTCAGACCAGACCACCGGGCGCACCCCGATGCCGAGCCCGCAGCTTCTGGTGCTCTTCGGCAGCCAGACAGGCACGGCTCAGGATGTGTCGGAGAGACTGGGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGTGCAGGCCCTGGACTCCTACCCGGTG
Seq A exon
GTGAATCTGATTAACGAGCCCCTGGTGATATTTGTTTGTGCAACTACAG
Seq C2 exon
GCCAAGGAGACCCCCCTGACAACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188566-0-2,0-1,0-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.046
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=PU(26.8=82.2)
A:
NA
C2:
PF0025820=Flavodoxin_1=FE(18.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains