MmuALTA0011840-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25110384-25110898:-
Coord C1 exon
chr2:25110737-25110898
Coord A exon
chr2:25110462-25110547
Coord C2 exon
chr2:25110384-25110461
Length
86 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
CTTTTACTCTGTTCCCCTAGGTG
3' ss Score
12.25
Exon sequences
Seq C1 exon
GTGCGGTTCTGGCCGGCGTGTGCAGTAATGCAGGTTCCACAGCTCCTGGTGCTTTTCGGCAGCCAGACTGGTACAGCCCAGGACGAGGCGGAGAGGCTGGGCCGTGAGGCCCGGCGCCGGCGGCTAGGTTGCCGCGTGCAGGCTTTGGACTCTTACTCCGTG
Seq A exon
GTGAAGGTGGTGGTGGGATGCGGTGCAGGGAGGGCACTGATCAAGGCTGCCAGAGACCTTACATCTACTTGTGTCTTGTCCTCGAG
Seq C2 exon
GCGAATCTCATTAGGGAGCCCCTGGTGATATTTGTTTGTGCGACCACAGGCCAAGGAGACCCTCCTGACAACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471-1-10,1-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.112 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=PU(31.6=82.2)
A:
NA
C2:
PF0025820=Flavodoxin_1=FE(21.4=100)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGCAGGTTCCACAGCTCC
R:
CAAATATCACCAGGGGCTCCC
Band lengths:
171-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: