MmuEX0046265 @ mm9
Exon Skipping
Gene
ENSMUSG00000064289 | Tank
Description
TRAF family member-associated Nf-kappa B activator [Source:MGI Symbol;Acc:MGI:107676]
Coordinates
chr2:61431134-61451855:+
Coord C1 exon
chr2:61431134-61431265
Coord A exon
chr2:61432054-61432258
Coord C2 exon
chr2:61451708-61451855
Length
205 bp
Sequences
Splice sites
3' ss Seq
GGTGTCTTTTTCTCTCGCAGAAA
3' ss Score
10.89
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
AGGTGAAGCGTTAATGACTCAGAGCGCAGTCGCTGCCCTCTGAACTGGAACGGAAAGCTACTTCCGGTTGCAGTCATTCTGCCGGGCACCGGCGACCTGTGGCGTGAGCGAGCACAGCCGGAACCCTCCACT
Seq A exon
AAACTTTTGAGAAGTTAACATGAAGAAGAAACGATAAGCTAGAAAGTGAAGAGAGGTGGAGTAACACCCCGCCGTTTGCCCAGTAACAGAAAGACAAGCACCACCTTCTTGCGAAAAGCCATATTGTCCCCTTTGAGAGGGGCCGTGAACCCCTCAAATGATAAAGGAGAAAATGAAACCACCCCGCTAAAGCGTTTTCAATCAT
Seq C2 exon
AGCTGGCATTCCTACCATCCTTTATAGTGATGCTACAGGACAAAGAGGAATGGATAAAAACATTGGTGAGCAACTCAATAGAGCATATGAAGCCTTCCGACAGGCATGCATGGATAGAGATTCAGCAGTAAGAGAGCTACAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064289-'2-6,'2-5,5-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.383
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF067856=UPF0242=PU(41.8=76.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGAAGCGTTAATGACTCAGA
R:
TGCTGTAGCTCTCTTACTGCTGA
Band lengths:
276-481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types