HsaEX0063573 @ hg19

Exon Skipping

Gene

ENSG00000136560 | TANK

Description

TRAF family member-associated NFKB activator [Source:HGNC Symbol;Acc:11562]

Coordinates

chr2:162016808-162036272:+

Coord C1 exon

chr2:162016808-162016997

Coord A exon

chr2:162017796-162017923

Coord C2 exon

chr2:162036125-162036272

Length

128 bp

Sequences

Splice sites

3' ss Seq

GTGTTTATCTCACCTCACAGGAG

3' ss Score

9.66

5' ss Seq

GAGGTAGCA

5' ss Score

4.75

Exon sequences

Seq C1 exon

AGAAGAGCCCTGGGCTGGGTGGGGCAGGGCGGAAGGGCCCTGGCCTTGTTGGGTGGAGGTGAAGAGTTAATGGCTCCGCGCGCAGGCACTGCCCTCTGAACTGGAACAAAATGCAACTTCCGGTTGGAGTCACTCGGCCAGGCGCCGGCGACCTGAGGGGAGAGGGAACGCAGCTGAAAGCGTGAACTGT

Seq A exon

GAGATGCTTTTGACAAGTTATAATAAGGGAGAGATGGTAGTAAAGGAAGTGAAGAAGCGACGTGAAATTGAAGGAAAAGAAAATGACCTGCCTTCTTACCGCGGTTGGAATACACACCCAAACGAGAG

Seq C2 exon

ACCTGTCATTTACTCCATCCTTTATAGTGATGCTACAGGACGAAGAGGAATGGATAAAAACATTGGCGAGCAACTCAATAAAGCGTATGAAGCCTTCCGGCAGGCATGCATGGATAGAGATTCTGCAGTAAAAGAATTACAGCAAAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000136560-'2-19,'2-13,5-19

Average complexity

C2

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (No Ref, Alt. ATG)

Show structural model

Features

Disorder rate (Iupred):

C1=NA A=0.417 C2=0.286

Domain overlap (PFAM):

C1:

NA

A:

NO

C2:

PF0189514=PhoU=PU(41.0=97.0),PF075417=EIF_2_alpha=PU(43.2=97.0),PF0205011=FliJ=PU(41.7=90.9),PF131661=AAA_13=PU(45.1=97.0),PF051038=DivIVA=PU(39.4=78.8),PF040127=PspA_IM30=PU(46.3=93.9),PF089415=USP8_interact=PU(28.6=54.5),PF041569=IncA=PU(39.2=87.9),PF125063=DUF3713=PU(39.5=90.9)

Main Inclusion Isoform:

ENSP00000384235