HsaALTD0006369-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000136560 | TANK
Description
TRAF family member-associated NFKB activator [Source:HGNC Symbol;Acc:11562]
Coordinates
chr2:162016968-162036272:+
Coord C1 exon
chr2:162016968-162016995
Coord A exon
chr2:162016996-162016997
Coord C2 exon
chr2:162036125-162036272
Length
2 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
TTGATCTCATTATTTTGCAGACC
3' ss Score
10.35
Exon sequences
Seq C1 exon
AGAGGGAACGCAGCTGAAAGCGTGAACT
Seq A exon
GT
Seq C2 exon
ACCTGTCATTTACTCCATCCTTTATAGTGATGCTACAGGACGAAGAGGAATGGATAAAAACATTGGCGAGCAACTCAATAAAGCGTATGAAGCCTTCCGGCAGGCATGCATGGATAGAGATTCTGCAGTAAAAGAATTACAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136560-1-19,2-19-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.286
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0189514=PhoU=PU(41.0=97.0),PF075417=EIF_2_alpha=PU(43.2=97.0),PF0205011=FliJ=PU(41.7=90.9),PF131661=AAA_13=PU(45.1=97.0),PF051038=DivIVA=PU(39.4=78.8),PF040127=PspA_IM30=PU(46.3=93.9),PF089415=USP8_interact=PU(28.6=54.5),PF041569=IncA=PU(39.2=87.9),PF125063=DUF3713=PU(39.5=90.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGGAACGCAGCTGAAAG
R:
TGAGTTGCTCGCCAATGTTTT
Band lengths:
105-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)