MmuEX0046265 @ mm10
Exon Skipping
Gene
ENSMUSG00000064289 | Tank
Description
TRAF family member-associated Nf-kappa B activator [Source:MGI Symbol;Acc:MGI:107676]
Coordinates
chr2:61578585-61613798:+
Coord C1 exon
chr2:61578585-61578693
Coord A exon
chr2:61593997-61594201
Coord C2 exon
chr2:61613651-61613798
Length
205 bp
Sequences
Splice sites
3' ss Seq
GGTGTCTTTTTCTCTCGCAGAAA
3' ss Score
10.89
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
GTTTGGGCAGCATCTGTAGAGCCTGTGCAAACGGCTTCCAGAATGGGTACGTGCCTATGTCTTTAAAGAGACATAGTCTGCGAAGGAACGCCTGTCACCTGGAGACGAG
Seq A exon
AAACTTTTGAGAAGTTAACATGAAGAAGAAACGATAAGCTAGAAAGTGAAGAGAGGTGGAGTAACACCCCGCCGTTTGCCCAGTAACAGAAAGACAAGCACCACCTTCTTGCGAAAAGCCATATTGTCCCCTTTGAGAGGGGCCGTGAACCCCTCAAATGATAAAGGAGAAAATGAAACCACCCCGCTAAAGCGTTTTCAATCAT
Seq C2 exon
AGCTGGCATTCCTACCATCCTTTATAGTGATGCTACAGGACAAAGAGGAATGGATAAAAACATTGGTGAGCAACTCAATAGAGCATATGAAGCCTTCCGACAGGCATGCATGGATAGAGATTCAGCAGTAAGAGAGCTACAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064289_MULTIEX1-1/9=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=0.254 A=0.000 C2=0.386
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF067856=UPF0242=PU(36.5=93.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGGCAGCATCTGTAGAGC
R:
TGCTGTAGCTCTCTTACTGCTGA
Band lengths:
252-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types