MmuEX0046264 @ mm10
Exon Skipping
Gene
ENSMUSG00000064289 | Tank
Description
TRAF family member-associated Nf-kappa B activator [Source:MGI Symbol;Acc:MGI:107676]
Coordinates
chr2:61593077-61627014:+
Coord C1 exon
chr2:61593077-61593208
Coord A exon
chr2:61613651-61613798
Coord C2 exon
chr2:61626906-61627014
Length
148 bp
Sequences
Splice sites
3' ss Seq
GCTGTTCTGATATTTTCCAGAGC
3' ss Score
8.21
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
AGGTGAAGCGTTAATGACTCAGAGCGCAGTCGCTGCCCTCTGAACTGGAACGGAAAGCTACTTCCGGTTGCAGTCATTCTGCCGGGCACCGGCGACCTGTGGCGTGAGCGAGCACAGCCGGAACCCTCCACT
Seq A exon
AGCTGGCATTCCTACCATCCTTTATAGTGATGCTACAGGACAAAGAGGAATGGATAAAAACATTGGTGAGCAACTCAATAGAGCATATGAAGCCTTCCGACAGGCATGCATGGATAGAGATTCAGCAGTAAGAGAGCTACAGCAAAAG
Seq C2 exon
ACTGAGAACTATGAACAAAGAATACGCGAGCAACAGGAACAGCTGTCATTTCAACAAAACCTAATTGACAGGCTGAAATCACAGCTACTTCTCGTGGATTCTAGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064289-'2-14,'2-8,8-14
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.386 C2=0.302
Domain overlap (PFAM):
C1:
NA
A:
PF067856=UPF0242=PU(36.5=93.9)
C2:
PF067856=UPF0242=FE(40.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTTAATGACTCAGAGCGC
R:
TCGACTAGAATCCACGAGAAGT
Band lengths:
234-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types