MmuALTA0017805-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000064289 | Tank
Description
TRAF family member-associated Nf-kappa B activator [Source:MGI Symbol;Acc:MGI:107676]
Coordinates
chr2:61613651-61627014:+
Coord C1 exon
chr2:61613651-61613798
Coord A exon
NA
Coord C2 exon
chr2:61626906-61627014
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TTGGTTTTTTTTGTCAGCAGACT
3' ss Score
5.79
Exon sequences
Seq C1 exon
AGCTGGCATTCCTACCATCCTTTATAGTGATGCTACAGGACAAAGAGGAATGGATAAAAACATTGGTGAGCAACTCAATAGAGCATATGAAGCCTTCCGACAGGCATGCATGGATAGAGATTCAGCAGTAAGAGAGCTACAGCAAAAG
Seq A exon
NA
Seq C2 exon
ACTGAGAACTATGAACAAAGAATACGCGAGCAACAGGAACAGCTGTCATTTCAACAAAACCTAATTGACAGGCTGAAATCACAGCTACTTCTCGTGGATTCTAGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064289-8-14,8-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=NA C2=0.306
Domain overlap (PFAM):
C1:
PF067856=UPF0242=PU(36.5=93.9)
A:
NA
C2:
PF067856=UPF0242=FE(40.0=100)
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACAGGCATGCATGGATAG
R:
CTGTTCCTGTTGCTCGCGTAT
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types