BtaALTA0029534-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000006654 | TANK
Description
TRAF family member-associated NFKB activator [Source:HGNC Symbol;Acc:HGNC:11562]
Coordinates
chr2:35277980-35300122:-
Coord C1 exon
chr2:35299975-35300122
Coord A exon
NA
Coord C2 exon
chr2:35277980-35278088
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
ACTGGTTTTTATGTCAGCAGACT
3' ss Score
4.78
Exon sequences
Seq C1 exon
ATCTGTCATTTACTTCATCATTTATAGTGATGCAACAGGACATAGAGGAATGGATAAAAACATTGGCGAGCAACTCAATAAAGCTTATGAAGCCTTTCGACAGGCATGCATGGATAGAGATTCTGCAGTAAAGGAACTACAGCAGAAG
Seq A exon
NA
Seq C2 exon
ACTGAAAACTATGAGCAGAGAATACGTGAGCAACAGGAACAGCTGTCACTTCAACAAACTATTATTGACAAGCTAACATCACAGTTACTTCTTGTGAATTCCAGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006654-6-12,6-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF125063=DUF3713=PU(34.7=78.8)
A:
NA
C2:
PF125063=DUF3713=FE(48.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCGACAGGCATGCATGGA
R:
ACAGCTGTTCCTGTTGCTCAC
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development