GgaALTA1031663-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000011131 | TANK
Description
TRAF family member-associated NF-kappa-B activator [Source:RefSeq peptide;Acc:NP_001264800]
Coordinates
chr7:20972944-20975797:-
Coord C1 exon
chr7:20975651-20975797
Coord A exon
chr7:20973049-20973052
Coord C2 exon
chr7:20972944-20973048
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
TAATTAAATTATATTTGCAGACA
3' ss Score
5.96
Exon sequences
Seq C1 exon
ATCTCTTAACTCGACCATCCTTTCAGTGATGAAACAACATTGGGAGTTATGGACAAAAACATTGGAGAGCAACTTAACAAAGCTTATGAAGCCTATCGACAAGCATGCATGGATAGGGACCATGCTGTGAAAGAACTACAGCAAAAA
Seq A exon
ACAG
Seq C2 exon
AGAACTACATGCAGCAAATATGTGAACAGCAGGAACAGATAGAGCTTCAAAACAGCATTATTGCAAAACTGAATTCACAGTTAGCTGCTCTGAATGCTAATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011131-0-3,0-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=NA C2=0.178
Domain overlap (PFAM):
C1:
PF150351=Rootletin=PU(15.1=69.7),PF0246513=FliD_N=PU(18.1=45.5)
A:
NA
C2:
PF150351=Rootletin=FE(23.7=100),PF0246513=FliD_N=FE(43.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCTATCGACAAGCATGCA
R:
CCTGCTGTTCACATATTTGCTGC
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]