HsaEX1039965 @ hg38
Exon Skipping
Gene
ENSG00000136560 | TANK
Description
TRAF family member associated NFKB activator [Source:HGNC Symbol;Acc:HGNC:11562]
Coordinates
chr2:161161285-161203595:+
Coord C1 exon
chr2:161161285-161161412
Coord A exon
chr2:161179614-161179761
Coord C2 exon
chr2:161203487-161203595
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTGATCTCATTATTTTGCAGACC
3' ss Score
10.35
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GAGATGCTTTTGACAAGTTATAATAAGGGAGAGATGGTAGTAAAGGAAGTGAAGAAGCGACGTGAAATTGAAGGAAAAGAAAATGACCTGCCTTCTTACCGCGGTTGGAATACACACCCAAACGAGAG
Seq A exon
ACCTGTCATTTACTCCATCCTTTATAGTGATGCTACAGGACGAAGAGGAATGGATAAAAACATTGGCGAGCAACTCAATAAAGCGTATGAAGCCTTCCGGCAGGCATGCATGGATAGAGATTCTGCAGTAAAAGAATTACAGCAAAAG
Seq C2 exon
ACTGAGAACTATGAGCAGAGAATACGTGAACAACAGGAACAGCTGTCACTTCAACAGACTATTATTGACAAGCTAAAATCTCAGTTACTTCTTGTGAATTCCACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136560-'11-29,'11-23,33-29
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=0.282 C2=0.277
Domain overlap (PFAM):
C1:
NO
A:
PF040127=PspA_IM30=PU(46.3=93.9),PF125063=DUF3713=PU(39.5=90.9),PF041569=IncA=PU(39.2=87.9)
C2:
PF040127=PspA_IM30=PD(49.2=86.5),PF041569=IncA=FE(36.4=100),PF125063=DUF3713=FE(42.4=100)
Main Skipping Isoform:
ENST00000402568fB27548
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTTGACAAGTTATAATAAGGGA
R:
GTGGAATTCACAAGAAGTAACTGAGA
Band lengths:
228-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains