RnoEX0088576 @ rn6
Exon Skipping
Gene
ENSRNOG00000008859 | Tank
Description
TRAF family member-associated NFKB activator [Source:RGD Symbol;Acc:628859]
Coordinates
chr3:47453821-47488459:+
Coord C1 exon
chr3:47453821-47453972
Coord A exon
chr3:47474984-47475131
Coord C2 exon
chr3:47488351-47488459
Length
148 bp
Sequences
Splice sites
3' ss Seq
GATGTTCTGATATTTTCCAGAGC
3' ss Score
8.3
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGGCTGGCCCTGAGGATGGAAGGTGAAACGTTAATGACTCAGAGCGCAGTCGCTGCCCTCTGAACTGGAACGGAAAGCAACTTCCGGCTGCAGTCGTTCTGCCGGGCACCGGCGACCTGTAGCGTGAGAGCGCGCGGCGGAAACCCTCAACT
Seq A exon
AGCTGGCATTCGTACCATCCTTTATAGTGATGCTACAGGACAAAGAGGAATGGATAAAAACATTGGCGAGCAACTCAATAGAGCATATGAAGCCTTCCGACAGGCATGCATGGATAGAGATTCAGCAGTAAGAGAGCTGCAGCAGAAG
Seq C2 exon
ACTGAGAACTATGAACAAAGAATACGCGAGCAACAGGAACAGCTGTCATTTCAACAAACTCTCATTGACAGGCTAAAGTCACAGCTACGTCTTGTGGATTCTAGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008859-'1-8,'1-3,9-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.388 C2=0.281
Domain overlap (PFAM):
C1:
NA
A:
PF040127=PspA_IM30=PU(46.3=93.9),PF067856=UPF0242=PU(36.9=93.9),PF048597=DUF641=PU(34.8=93.9),PF041569=IncA=PU(25.5=72.7)
C2:
PF040127=PspA_IM30=PD(50.7=91.9),PF067856=UPF0242=FE(42.9=100),PF048597=DUF641=FE(40.4=100),PF041569=IncA=FE(38.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGAGGATGGAAGGTGAA
R:
TCCACAAGACGTAGCTGTGAC
Band lengths:
244-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]