BtaEX0035591 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006654 | TANK
Description
TRAF family member-associated NFKB activator [Source:HGNC Symbol;Acc:HGNC:11562]
Coordinates
chr2:35277980-35324830:-
Coord C1 exon
chr2:35324730-35324830
Coord A exon
chr2:35299975-35300122
Coord C2 exon
chr2:35277980-35278088
Length
148 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTGATTATTTTCCAGATC
3' ss Score
8.15
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTGCCCTCTGAACTGGAACGGAAAACAACTTCCGGTTGGAGTCACTCGGCCGGGCGCCGGCGACTTAGAGACTGGAGAGACCGGTGCGGAAACCCTGAGCT
Seq A exon
ATCTGTCATTTACTTCATCATTTATAGTGATGCAACAGGACATAGAGGAATGGATAAAAACATTGGCGAGCAACTCAATAAAGCTTATGAAGCCTTTCGACAGGCATGCATGGATAGAGATTCTGCAGTAAAGGAACTACAGCAGAAG
Seq C2 exon
ACTGAAAACTATGAGCAGAGAATACGTGAGCAACAGGAACAGCTGTCACTTCAACAAACTATTATTGACAAGCTAACATCACAGTTACTTCTTGTGAATTCCAGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006654-'1-12,'1-1,6-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.218 C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
PF125063=DUF3713=PU(34.7=78.8)
C2:
PF125063=DUF3713=FE(48.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCTCTGAACTGGAACG
R:
CTCGACTGGAATTCACAAGAAGT
Band lengths:
210-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development