RnoALTA0039746-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000008859 | Tank
Description
TRAF family member-associated NFKB activator [Source:RGD Symbol;Acc:628859]
Coordinates
chr3:47474984-47488459:+
Coord C1 exon
chr3:47474984-47475131
Coord A exon
chr3:47488348-47488350
Coord C2 exon
chr3:47488351-47488459
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
GTTGGGTTTTTTTTTGTCAGCAG
3' ss Score
2.76
Exon sequences
Seq C1 exon
AGCTGGCATTCGTACCATCCTTTATAGTGATGCTACAGGACAAAGAGGAATGGATAAAAACATTGGCGAGCAACTCAATAGAGCATATGAAGCCTTCCGACAGGCATGCATGGATAGAGATTCAGCAGTAAGAGAGCTGCAGCAGAAG
Seq A exon
CAG
Seq C2 exon
ACTGAGAACTATGAACAAAGAATACGCGAGCAACAGGAACAGCTGTCATTTCAACAAACTCTCATTGACAGGCTAAAGTCACAGCTACGTCTTGTGGATTCTAGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008859-9-8,9-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.388 A=NA C2=0.281
Domain overlap (PFAM):
C1:
PF040127=PspA_IM30=PU(46.3=93.9),PF067856=UPF0242=PU(36.9=93.9),PF048597=DUF641=PU(34.8=93.9),PF041569=IncA=PU(25.5=72.7)
A:
NA
C2:
PF040127=PspA_IM30=PD(50.7=91.9),PF067856=UPF0242=FE(42.9=100),PF048597=DUF641=FE(40.4=100),PF041569=IncA=FE(38.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACAGGCATGCATGGATAG
R:
CTGTTCCTGTTGCTCGCGTAT
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]