HsaALTA0008448-2/2 @ hg19

Alternative 3'ss

Gene

ENSG00000136560 | TANK

Description

TRAF family member-associated NFKB activator [Source:HGNC Symbol;Acc:11562]

Coordinates

chr2:162036125-162060106:+

Coord C1 exon

chr2:162036125-162036272

Coord A exon

chr2:162059995-162059997

Coord C2 exon

chr2:162059998-162060106

Length

3 bp

Sequences

Splice sites

5' ss Seq

AAGGTGTGT

5' ss Score

6.64

3' ss Seq

CTAACTGGTTTTTATGTCAGCAG

3' ss Score

2.67

Exon sequences

Seq C1 exon

ACCTGTCATTTACTCCATCCTTTATAGTGATGCTACAGGACGAAGAGGAATGGATAAAAACATTGGCGAGCAACTCAATAAAGCGTATGAAGCCTTCCGGCAGGCATGCATGGATAGAGATTCTGCAGTAAAAGAATTACAGCAAAAG

Seq A exon

CAG

Seq C2 exon

ACTGAGAACTATGAGCAGAGAATACGTGAACAACAGGAACAGCTGTCACTTCAACAGACTATTATTGACAAGCTAAAATCTCAGTTACTTCTTGTGAATTCCACTCAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000136560-15-25,15-24-2/2

Average complexity

Alt3

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (No Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.286 A=NA C2=0.282

Domain overlap (PFAM):

C1:

PF0189514=PhoU=PU(41.0=97.0),PF075417=EIF_2_alpha=PU(43.2=97.0),PF0205011=FliJ=PU(41.7=90.9),PF131661=AAA_13=PU(45.1=97.0),PF051038=DivIVA=PU(39.4=78.8),PF040127=PspA_IM30=PU(46.3=93.9),PF089415=USP8_interact=PU(28.6=54.5),PF041569=IncA=PU(39.2=87.9),PF125063=DUF3713=PU(39.5=90.9)

A:

NA

C2:

PF0189514=PhoU=FE(46.2=100),PF075417=EIF_2_alpha=FE(48.6=100),PF0205011=FliJ=FE(50.0=100),PF131661=AAA_13=FE(50.7=100),PF051038=DivIVA=FE(54.5=100),PF040127=PspA_IM30=PD(50.7=91.9),PF089415=USP8_interact=FE(57.1=100),PF041569=IncA=FE(48.6=100),PF125063=DUF3713=FE(47.4=100)

Main Inclusion Isoform:

ENSP00000384235